On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
213.6
nTPM
HPA Brain:
299.9
nTPM
GTEx:
213.6
nTPM
FANTOM5:
336.6
Scaled Tags Per Million
Macaque:
49.6
nTPM
Mouse:
34.8
nTPM
Rat:
21.9
nTPM
Pig:
73.8
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
299.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 232.9
1830
Male, age 51, unknown
299.4
2411
Female, age 72, unknown
294.9
1870
Female, age 42, unknown
273.6
1833
Male, age 53, unknown
272.0
2019
Male, age 18, unknown
255.4
2828
Female, age 72, unknown
206.7
2666
Male, age 74, left hemisphere
204.1
2586
Male, age 75, left hemisphere
191.5
1827
Male, age 72, unknown
176.7
2219
Male, age 76, both hemispheres
154.0
Dorsal raphe nucleus nTPM: 203.7
2750
Male, age 76, both hemispheres
333.5
2016
Female, age 72, unknown
201.0
1828
Male, age 53, unknown
185.3
2298
Female, age 72, unknown
151.0
2047
Male, age 72, unknown
147.7
Inferior colliculus nTPM: 147.9
1890
Male, age 53, unknown
159.2
1848
Female, age 42, unknown
146.9
2849
Male, age 72, unknown
145.5
2097
Female, age 72, unknown
139.8
Median raphe nucleus nTPM: 180.9
2220
Male, age 76, midline
180.9
Periaquaductal grey, anterior nTPM: 166.2
2502
Female, age 75, unknown
195.5
1947
Male, age 18, unknown
161.1
1795
Male, age 51, unknown
141.8
Periaquaductal grey, dorsal nTPM: 144.6
2464
Female, age 72, unknown
198.3
1831
Male, age 72, unknown
154.8
1840
Male, age 53, unknown
113.4
2850
Male, age 76, both hemispheres
111.8
Periaquaductal grey, lateral nTPM: 149.9
2053
Male, age 18, unknown
181.4
2272
Male, age 74, both hemispheres
153.5
2140
Male, age 76, both hemispheres
114.9
Pretectal area nTPM: 163.3
2316
Male, age 76, right hemisphere
250.2
1815
Male, age 53, unknown
198.3
2407
Male, age 75, both hemispheres
190.7
2825
Male, age 18, unknown
178.8
1817
Female, age 42, unknown
168.6
2273
Male, age 74, both hemispheres
161.3
2224
Female, age 72, unknown
152.6
2007
Male, age 72, unknown
152.4
2667
Female, age 75, unknown
136.2
1816
Male, age 51, unknown
107.5
1944
Female, age 72, unknown
99.2
Red nucleus nTPM: 299.9
2823
Male, age 76, right hemisphere
351.9
1865
Male, age 51, unknown
351.1
1821
Female, age 72, unknown
340.4
1904
Male, age 53, unknown
339.3
2503
Female, age 72, unknown
321.5
2769
Male, age 72, unknown
311.2
2227
Male, age 72, unknown
309.6
2588
Male, age 74, left hemisphere
306.1
1954
Female, age 42, unknown
273.0
2785
Male, age 18, unknown
266.8
2725
Female, age 75, unknown
222.8
2584
Male, age 75, left hemisphere
205.6
Substantia nigra nTPM: 193.9
2590
Female, age 75, unknown
233.3
1851
Male, age 51, unknown
227.2
2409
Female, age 72, unknown
224.5
2241
Male, age 72, unknown
203.4
2699
Male, age 18, unknown
200.6
2583
Male, age 75, right hemisphere
186.0
1889
Female, age 72, unknown
178.6
2665
Male, age 74, both hemispheres
176.0
1941
Male, age 53, unknown
158.2
1916
Female, age 42, unknown
150.7
Superior colliculus nTPM: 206.6
1913
Female, age 42, unknown
303.4
1995
Male, age 72, unknown
276.3
2587
Male, age 74, left hemisphere
241.9
1895
Male, age 76, right hemisphere
238.8
2668
Female, age 75, unknown
212.9
1839
Male, age 51, unknown
194.8
1796
Male, age 53, unknown
168.1
2664
Male, age 75, both hemispheres
161.4
2261
Male, age 18, unknown
138.2
2087
Female, age 72, unknown
129.7
Ventral tegmental area nTPM: 213.4
2223
Female, age 72, unknown
257.5
2410
Female, age 72, unknown
252.1
2021
Male, age 53, unknown
212.6
1942
Male, age 51, unknown
199.1
1915
Female, age 42, unknown
185.6
2218
Male, age 76, both hemispheres
173.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
213.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 213.6
Samples: 183
Max nTPM: 665.5
Min nTPM: 31.3
Std nTPM: 96.4
Median nTPM: 185.2
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
665.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
571.4
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
465.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
448.2
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
432.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
431.5
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
406.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
392.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
375.5
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
369.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
360.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
357.7
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
356.0
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
355.5
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
354.9
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
350.6
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
348.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
344.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
340.5
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
340.1
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
339.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
324.9
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
322.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
321.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
321.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
319.9
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
318.8
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
317.4
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
316.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
316.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
312.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
312.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
311.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
311.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
308.7
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
286.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
286.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
285.5
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
285.4
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
283.5
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
281.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
279.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
278.5
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
277.9
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
276.7
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
276.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
265.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
265.0
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
264.9
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
262.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
262.6
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
260.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
259.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
259.0
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
253.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
251.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
251.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
249.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
245.7
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
245.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
240.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
239.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
238.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
238.9
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
237.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
236.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
235.4
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
235.2
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
235.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
235.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
228.5
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
222.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
218.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
217.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
213.8
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
213.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
213.2
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
211.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
205.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
204.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
204.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
203.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
202.7
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
202.6
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
198.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
197.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
197.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
194.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
192.3
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
188.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
185.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
185.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
184.3
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
181.4
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
181.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
179.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
179.6
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
178.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
178.4
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
177.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
177.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
177.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
175.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
175.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
175.0
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
174.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
174.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
174.3
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
172.6
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
170.5
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
168.8
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
168.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
168.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
167.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
167.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
165.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
164.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
164.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
163.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
162.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
161.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
160.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
159.2
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
157.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
156.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
154.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
154.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
153.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
150.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
150.8
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
149.6
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
149.5
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
147.5
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
147.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
147.2
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
147.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
146.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
144.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
142.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
139.6
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
139.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
138.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
138.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
136.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
131.8
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
130.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
130.4
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
129.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
129.3
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
127.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
127.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
127.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
125.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
125.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
123.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
122.6
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
122.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
121.3
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
121.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
119.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
119.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
117.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
117.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
116.2
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
116.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
114.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
114.6
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
114.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
113.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
107.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
106.8
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
105.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
105.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
104.4
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
102.6
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
102.2
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
92.3
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
73.1
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
70.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
68.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
66.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
62.0
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
31.3
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
49.6
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 49.6
Samples: 1
Max nTPM: 49.6
Min nTPM: 49.6
Sample A
49.6
Midbrain nTPM: 34.2
Samples: 1
Max nTPM: 34.2
Min nTPM: 34.2
Sample A
34.2
Superior colliculi nTPM: 28.3
Samples: 1
Max nTPM: 28.3
Min nTPM: 28.3
Sample A
28.3
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
73.8
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 73.9
Samples: 3
Max nTPM: 80.7
Min nTPM: 66.3
Sample A
Female
80.7
Sample B
Female
74.6
Sample C
Male
66.3
Midbrain nTPM: 60.8
Samples: 3
Max nTPM: 87.6
Min nTPM: 39.0
Sample B
Female
87.6
Sample C
Male
55.8
Sample D
Male
39.0
Periaqueductal gray nTPM: 61.5
Samples: 3
Max nTPM: 74.1
Min nTPM: 54.6
Sample B
Female
74.1
Sample C
Male
54.6
Sample D
Male
55.9
Superior colliculi nTPM: 60.1
Samples: 4
Max nTPM: 66.4
Min nTPM: 48.8
Sample A
Female
59.6
Sample B
Female
48.8
Sample C
Male
66.4
Sample D
Male
65.6
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
34.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 34.8
Samples: 4
Max nTPM: 35.7
Min nTPM: 34.1
Sample A
35.7
Sample B
34.9
Sample C
34.1
Sample D
34.6
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.9
Rat sample
Sample description
nTPM
Midbrain nTPM: 21.9
Samples: 4
Max nTPM: 23.8
Min nTPM: 19.6
Sample A
23.8
Sample A
19.6
Sample A
20.7
Sample A
23.5
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The Human Protein Atlas project is funded
