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  • PLAAT3
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:318.6 nTPM
HPA Brain:285.5 nTPM
GTEx:318.6 nTPM
FANTOM5:194.2 Scaled Tags Per Million
Pig:125.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

285.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 223.2
1981 Female, age 72, midline 271.2
2816 Male, age 47, midline 222.7
2194 Female, age 79, both hemispheres 216.9
2048 Male, age 55, midline 214.4
2565 Male, age 75, midline 190.8
Cervical spinal cord, dorsal horn
nTPM: 232.8
2296 Male, age 66, both hemispheres 354.8
2173 Female, age 72, unknown 336.0
2069 Male, age 47, both hemispheres 228.3
1877 Male, age 55, unknown 202.9
2297 Male, age 75, both hemispheres 143.6
2721 Male, age 90, both hemispheres 131.5
Cervical spinal cord, ventral horn
nTPM: 285.5
2809 Male, age 90, both hemispheres 330.6
2480 Male, age 75, both hemispheres 309.7
2098 Female, age 72, unknown 298.4
2068 Male, age 55, unknown 265.5
2295 Male, age 66, both hemispheres 259.8
2820 Female, age 79, both hemispheres 248.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

318.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 318.6
Samples: 204

Max nTPM: 618.6
Min nTPM: 114.6
Std nTPM: 78.2
Median nTPM: 317.3
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 618.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 554.7
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 505.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 502.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 460.5
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 457.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 437.0
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 435.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 434.4
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 432.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 432.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 427.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 425.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 424.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 423.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 422.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 420.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 418.2
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 417.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 416.3
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 414.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 414.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 412.4
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 410.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 408.5
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 403.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 402.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 402.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 401.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 399.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 397.7
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 395.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 394.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 392.4
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 385.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 384.9
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 381.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 381.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 381.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 380.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 380.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 378.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 378.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 377.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 376.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 375.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 375.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 373.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 370.3
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 369.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 369.1
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 369.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 368.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 367.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 367.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 364.6
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 363.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 362.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 361.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 361.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 361.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 359.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 357.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 353.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 352.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 349.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 348.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 348.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 347.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 347.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 345.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 344.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 343.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 343.1
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 342.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 341.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 341.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 340.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 336.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 335.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 335.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 334.0
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 332.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 332.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 332.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 329.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 328.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 328.8
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 328.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 327.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 326.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 325.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 324.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 323.3
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 322.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 320.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 320.9
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 320.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 318.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 318.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 317.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 317.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 316.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 316.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 316.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 313.3
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 313.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 312.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 312.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 312.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 311.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 309.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 309.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 309.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 307.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 307.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 307.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 307.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 305.6
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 304.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 304.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 303.8
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 303.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 302.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 302.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 301.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 301.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 301.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 300.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 299.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 299.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 297.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 297.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 297.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 294.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 294.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 294.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 293.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 293.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 292.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 292.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 290.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 289.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 289.1
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 288.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 288.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 287.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 284.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 283.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 283.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 282.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 279.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 277.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 274.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 272.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 271.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 270.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 270.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 269.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 266.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 266.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 265.6
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 265.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 261.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 260.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 260.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 257.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 253.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 251.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 249.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 249.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 249.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 245.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 244.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 244.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 235.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 234.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 226.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 225.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 223.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 221.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 220.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 218.9
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 218.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 215.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 211.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 207.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 200.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 196.5
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 193.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 189.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 184.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 182.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 181.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 177.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 174.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 172.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 150.2
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 144.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 143.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 138.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 133.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 119.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 114.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

194.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 194.2
FF:10159-103A6 76 years, female 225.6
FF:10181-103D1 60 years, female 162.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

125.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 123.6
Samples: 4

Max nTPM: 150.3
Min nTPM: 87.1
Sample A Female 87.1
Sample B Female 150.3
Sample C Male 148.7
Sample D Male 108.2
Ventral spinal cord
nTPM: 125.6
Samples: 4

Max nTPM: 145.3
Min nTPM: 112.0
Sample A Female 112.0
Sample B Female 127.5
Sample C Male 117.5
Sample D Male 145.3

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