A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
42.4
nTPM
Monaco:
103.1
nTPM
Schmiedel:
44.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.4
HPA sample
nTPM
Memory B-cell nTPM: 42.5
Samples: 6
Max nTPM: 76.1
Min nTPM: 24.2
P10809_1017
24.2
P10809_1025
43.2
P10809_1044
76.1
P10809_1063
36.3
P10809_1092
37.8
P10809_1105
37.1
Naive B-cell nTPM: 31.0
Samples: 6
Max nTPM: 68.9
Min nTPM: 11.6
P10809_1011
11.6
P10809_1029
31.6
P10809_1048
68.9
P10809_1067
15.1
P10809_1091
30.6
P10809_1104
28.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
103.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 51.7
Samples: 4
Max nTPM: 58.7
Min nTPM: 46.2
RHH5310_R3677
46.2
RHH5218_R3590
50.9
RHH5247_R3619
50.9
RHH5276_R3648
58.7
Naive B-cell nTPM: 54.0
Samples: 4
Max nTPM: 75.7
Min nTPM: 41.5
RHH5308_R3675
44.9
RHH5216_R3588
41.5
RHH5245_R3617
53.9
RHH5274_R3646
75.7
Non-switched memory B-cell nTPM: 53.8
Samples: 4
Max nTPM: 66.3
Min nTPM: 48.4
RHH5309_R3676
48.4
RHH5217_R3589
51.6
RHH5246_R3618
66.3
RHH5275_R3647
48.9
Plasmablast nTPM: 103.2
Samples: 4
Max nTPM: 130.7
Min nTPM: 77.3
RHH5312_R3679
86.4
RHH5220_R3592
118.2
RHH5249_R3621
130.7
RHH5278_R3650
77.3
Switched memory B-cell nTPM: 47.9
Samples: 4
Max nTPM: 60.2
Min nTPM: 31.1
RHH5311_R3678
51.2
RHH5219_R3591
31.1
RHH5248_R3620
48.9
RHH5277_R3649
60.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
44.3
Schmiedel sample id
TPM
Naive B-cell TPM: 44.3
Samples: 91
Max TPM: 68.6
Min TPM: 24.2
B_CELL_NAIVE_1
68.6
B_CELL_NAIVE_2
68.2
B_CELL_NAIVE_3
66.0
B_CELL_NAIVE_4
60.7
B_CELL_NAIVE_5
59.9
B_CELL_NAIVE_6
59.4
B_CELL_NAIVE_7
57.8
B_CELL_NAIVE_8
57.3
B_CELL_NAIVE_9
57.2
B_CELL_NAIVE_10
57.2
B_CELL_NAIVE_11
55.1
B_CELL_NAIVE_12
54.8
B_CELL_NAIVE_13
54.7
B_CELL_NAIVE_14
53.5
B_CELL_NAIVE_15
53.5
B_CELL_NAIVE_16
52.9
B_CELL_NAIVE_17
51.6
B_CELL_NAIVE_18
50.5
B_CELL_NAIVE_19
50.2
B_CELL_NAIVE_20
50.2
B_CELL_NAIVE_21
49.6
B_CELL_NAIVE_22
49.2
B_CELL_NAIVE_23
48.9
B_CELL_NAIVE_24
48.8
B_CELL_NAIVE_25
48.7
B_CELL_NAIVE_26
47.9
B_CELL_NAIVE_27
47.6
B_CELL_NAIVE_28
47.4
B_CELL_NAIVE_29
47.0
B_CELL_NAIVE_30
46.9
B_CELL_NAIVE_31
46.5
B_CELL_NAIVE_32
46.2
B_CELL_NAIVE_33
45.8
B_CELL_NAIVE_34
45.7
B_CELL_NAIVE_35
45.5
B_CELL_NAIVE_36
45.5
B_CELL_NAIVE_37
44.7
B_CELL_NAIVE_38
44.4
B_CELL_NAIVE_39
44.1
B_CELL_NAIVE_40
44.0
B_CELL_NAIVE_41
43.8
B_CELL_NAIVE_42
43.8
B_CELL_NAIVE_43
43.7
B_CELL_NAIVE_44
43.7
B_CELL_NAIVE_45
43.7
B_CELL_NAIVE_46
43.6
B_CELL_NAIVE_47
43.5
B_CELL_NAIVE_48
43.5
B_CELL_NAIVE_49
43.4
B_CELL_NAIVE_50
43.1
B_CELL_NAIVE_51
42.9
B_CELL_NAIVE_52
42.8
B_CELL_NAIVE_53
42.0
B_CELL_NAIVE_54
41.9
B_CELL_NAIVE_55
41.7
B_CELL_NAIVE_56
41.7
B_CELL_NAIVE_57
41.6
B_CELL_NAIVE_58
41.5
B_CELL_NAIVE_59
41.3
B_CELL_NAIVE_60
41.0
B_CELL_NAIVE_61
40.9
B_CELL_NAIVE_62
40.3
B_CELL_NAIVE_63
39.3
B_CELL_NAIVE_64
39.2
B_CELL_NAIVE_65
39.0
B_CELL_NAIVE_66
38.9
B_CELL_NAIVE_67
38.7
B_CELL_NAIVE_68
38.6
B_CELL_NAIVE_69
38.6
B_CELL_NAIVE_70
38.5
B_CELL_NAIVE_71
38.4
B_CELL_NAIVE_72
37.6
B_CELL_NAIVE_73
37.3
B_CELL_NAIVE_74
37.0
B_CELL_NAIVE_75
36.8
B_CELL_NAIVE_76
36.7
B_CELL_NAIVE_77
36.5
B_CELL_NAIVE_78
36.0
B_CELL_NAIVE_79
35.7
B_CELL_NAIVE_80
35.0
B_CELL_NAIVE_81
34.8
B_CELL_NAIVE_82
34.2
B_CELL_NAIVE_83
34.2
B_CELL_NAIVE_84
34.0
B_CELL_NAIVE_85
33.3
B_CELL_NAIVE_86
31.8
B_CELL_NAIVE_87
31.3
B_CELL_NAIVE_88
30.8
B_CELL_NAIVE_89
28.1
B_CELL_NAIVE_90
28.0
B_CELL_NAIVE_91
24.2
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The Human Protein Atlas project is funded
