A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
70.7
nTPM
Monaco:
76.7
nTPM
Schmiedel:
37.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
70.7
HPA sample
nTPM
Classical monocyte nTPM: 38.7
Samples: 6
Max nTPM: 49.7
Min nTPM: 27.0
P10809_1003
27.0
P10809_1020
45.2
P10809_1039
49.7
P10809_1058
34.0
P10809_1080
38.8
P10809_1107
37.6
Intermediate monocyte nTPM: 50.8
Samples: 6
Max nTPM: 57.5
Min nTPM: 45.1
P10809_1004
45.5
P10809_1023
57.5
P10809_1042
53.8
P10809_1061
49.0
P10809_1081
45.1
P10809_1108
54.1
Non-classical monocyte nTPM: 70.7
Samples: 5
Max nTPM: 115.1
Min nTPM: 44.7
P10809_1005
44.7
P10809_1053
70.8
P10809_1072
115.1
P10809_1082
59.3
P10809_1109
63.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
76.7
Monaco sample
nTPM
Classical monocyte nTPM: 50.4
Samples: 4
Max nTPM: 67.2
Min nTPM: 33.5
RHH5313_R3680
44.9
RHH5221_R3593
33.5
RHH5250_R3622
55.9
RHH5279_R3651
67.2
Intermediate monocyte nTPM: 76.7
Samples: 4
Max nTPM: 81.5
Min nTPM: 72.9
RHH5314_R3681
81.5
RHH5222_R3594
72.9
RHH5251_R3623
77.8
RHH5280_R3652
74.6
Non-classical monocyte nTPM: 70.4
Samples: 4
Max nTPM: 79.0
Min nTPM: 60.2
RHH5315_R3682
71.9
RHH5223_R3595
70.4
RHH5252_R3624
60.2
RHH5281_R3653
79.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.5
Schmiedel sample id
TPM
Classical monocyte TPM: 22.4
Samples: 91
Max TPM: 32.2
Min TPM: 14.0
MONOCYTES_1
32.2
MONOCYTES_2
30.7
MONOCYTES_3
30.2
MONOCYTES_4
29.2
MONOCYTES_5
29.0
MONOCYTES_6
28.9
MONOCYTES_7
28.2
MONOCYTES_8
27.9
MONOCYTES_9
27.9
MONOCYTES_10
27.7
MONOCYTES_11
27.6
MONOCYTES_12
27.2
MONOCYTES_13
27.0
MONOCYTES_14
26.7
MONOCYTES_15
26.6
MONOCYTES_16
26.5
MONOCYTES_17
26.5
MONOCYTES_18
26.2
MONOCYTES_19
26.0
MONOCYTES_20
25.3
MONOCYTES_21
25.1
MONOCYTES_22
25.0
MONOCYTES_23
25.0
MONOCYTES_24
25.0
MONOCYTES_25
24.9
MONOCYTES_26
24.9
MONOCYTES_27
24.5
MONOCYTES_28
24.4
MONOCYTES_29
24.3
MONOCYTES_30
24.1
MONOCYTES_31
23.3
MONOCYTES_32
23.3
MONOCYTES_33
23.1
MONOCYTES_34
23.0
MONOCYTES_35
22.9
MONOCYTES_36
22.8
MONOCYTES_37
22.8
MONOCYTES_38
22.7
MONOCYTES_39
22.7
MONOCYTES_40
22.7
MONOCYTES_41
22.7
MONOCYTES_42
22.6
MONOCYTES_43
22.6
MONOCYTES_44
22.5
MONOCYTES_45
22.5
MONOCYTES_46
22.3
MONOCYTES_47
22.1
MONOCYTES_48
22.1
MONOCYTES_49
21.7
MONOCYTES_50
21.6
MONOCYTES_51
21.6
MONOCYTES_52
21.5
MONOCYTES_53
21.4
MONOCYTES_54
21.3
MONOCYTES_55
21.2
MONOCYTES_56
21.1
MONOCYTES_57
21.0
MONOCYTES_58
20.4
MONOCYTES_59
20.4
MONOCYTES_60
20.1
MONOCYTES_61
20.1
MONOCYTES_62
20.0
MONOCYTES_63
19.9
MONOCYTES_64
19.9
MONOCYTES_65
19.8
MONOCYTES_66
19.7
MONOCYTES_67
19.6
MONOCYTES_68
19.6
MONOCYTES_69
19.4
MONOCYTES_70
19.4
MONOCYTES_71
19.3
MONOCYTES_72
19.1
MONOCYTES_73
19.0
MONOCYTES_74
19.0
MONOCYTES_75
18.8
MONOCYTES_76
18.8
MONOCYTES_77
18.8
MONOCYTES_78
18.7
MONOCYTES_79
18.6
MONOCYTES_80
18.3
MONOCYTES_81
18.1
MONOCYTES_82
18.1
MONOCYTES_83
18.1
MONOCYTES_84
18.0
MONOCYTES_85
18.0
MONOCYTES_86
17.8
MONOCYTES_87
17.0
MONOCYTES_88
16.7
MONOCYTES_89
15.3
MONOCYTES_90
14.6
MONOCYTES_91
14.0
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Non-classical monocyte TPM: 37.5
Samples: 90
Max TPM: 58.3
Min TPM: 25.8
M2_1
58.3
M2_2
52.4
M2_3
52.0
M2_4
50.2
M2_5
48.7
M2_6
48.2
M2_7
48.0
M2_8
47.9
M2_9
46.6
M2_10
46.5
M2_11
46.2
M2_12
45.0
M2_13
44.9
M2_14
43.9
M2_15
43.7
M2_16
43.3
M2_17
42.9
M2_18
42.4
M2_19
42.0
M2_20
42.0
M2_21
42.0
M2_22
41.8
M2_23
40.5
M2_24
40.5
M2_25
40.4
M2_26
40.4
M2_27
40.0
M2_28
39.9
M2_29
39.6
M2_30
39.5
M2_31
39.3
M2_32
39.1
M2_33
39.0
M2_34
38.9
M2_35
38.8
M2_36
38.7
M2_37
38.4
M2_38
38.0
M2_39
37.6
M2_40
37.5
M2_41
37.5
M2_42
37.4
M2_43
37.4
M2_44
37.1
M2_45
36.9
M2_46
36.9
M2_47
36.8
M2_48
36.8
M2_49
36.4
M2_50
36.2
M2_51
35.9
M2_52
35.9
M2_53
35.3
M2_54
35.3
M2_55
35.2
M2_56
34.9
M2_57
34.9
M2_58
34.7
M2_59
34.6
M2_60
34.4
M2_61
34.1
M2_62
34.0
M2_63
33.9
M2_64
33.6
M2_65
33.3
M2_66
33.1
M2_67
33.1
M2_68
33.1
M2_69
33.0
M2_70
33.0
M2_71
32.7
M2_72
32.5
M2_73
32.1
M2_74
32.1
M2_75
31.8
M2_76
31.7
M2_77
31.5
M2_78
31.5
M2_79
31.2
M2_80
30.6
M2_81
30.5
M2_82
29.1
M2_83
29.1
M2_84
28.3
M2_85
28.1
M2_86
27.9
M2_87
27.9
M2_88
27.6
M2_89
26.1
M2_90
25.8
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