A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
39.1
nTPM
Monaco:
46.8
nTPM
Schmiedel:
36.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.1
HPA sample
nTPM
NK-cell nTPM: 39.1
Samples: 6
Max nTPM: 65.0
Min nTPM: 19.3
P10809_1013
27.6
P10809_1033
65.0
P10809_1052
40.1
P10809_1071
56.5
P10809_1093
19.3
P10809_1103
26.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.8
Monaco sample
nTPM
NK-cell nTPM: 46.8
Samples: 4
Max nTPM: 57.4
Min nTPM: 34.7
RHH5316_R3683
55.0
RHH5224_R3596
34.7
RHH5253_R3625
40.0
RHH5282_R3654
57.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.1
Schmiedel sample id
TPM
NK-cell TPM: 36.1
Samples: 90
Max TPM: 60.9
Min TPM: 20.3
NK_1
60.9
NK_2
60.1
NK_3
58.3
NK_4
57.9
NK_5
53.3
NK_6
51.2
NK_7
49.9
NK_8
49.6
NK_9
49.1
NK_10
48.5
NK_11
48.3
NK_12
48.1
NK_13
46.6
NK_14
44.7
NK_15
42.7
NK_16
42.3
NK_17
41.9
NK_18
41.8
NK_19
41.4
NK_20
41.0
NK_21
40.2
NK_22
40.2
NK_23
40.1
NK_24
40.0
NK_25
38.4
NK_26
38.2
NK_27
38.2
NK_28
37.8
NK_29
37.7
NK_30
37.7
NK_31
37.7
NK_32
37.6
NK_33
37.5
NK_34
37.1
NK_35
37.0
NK_36
37.0
NK_37
36.4
NK_38
36.0
NK_39
36.0
NK_40
35.9
NK_41
35.8
NK_42
35.7
NK_43
35.5
NK_44
35.2
NK_45
35.0
NK_46
34.4
NK_47
34.1
NK_48
33.9
NK_49
33.9
NK_50
33.8
NK_51
33.6
NK_52
33.4
NK_53
33.3
NK_54
33.2
NK_55
32.9
NK_56
32.7
NK_57
32.5
NK_58
32.2
NK_59
32.2
NK_60
32.2
NK_61
31.7
NK_62
31.6
NK_63
31.3
NK_64
31.1
NK_65
31.1
NK_66
31.0
NK_67
31.0
NK_68
31.0
NK_69
30.9
NK_70
30.4
NK_71
29.8
NK_72
29.5
NK_73
29.2
NK_74
29.1
NK_75
28.9
NK_76
28.2
NK_77
27.5
NK_78
27.1
NK_79
26.7
NK_80
26.2
NK_81
25.7
NK_82
25.6
NK_83
25.4
NK_84
25.0
NK_85
24.6
NK_86
24.3
NK_87
24.2
NK_88
24.2
NK_89
23.4
NK_90
20.3
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