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  • BASP1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:211.9 nTPM
HPA Brain:269.8 nTPM
GTEx:211.9 nTPM
FANTOM5:865.1 Scaled Tags Per Million
Pig:268.6 nTPM
Mouse:332.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

269.8
Sample id Sample description nTPM
Amygdala
nTPM: 157.4
1987 Female, age 91, left hemisphere 218.4
2517 Female, age 94, left hemisphere 190.3
2814 Male, age 76, right hemisphere 164.8
2514 Male, age 75, right hemisphere 140.0
2695 Female, age 67, right hemisphere 73.6
Basal amygdala
nTPM: 218.6
2243 Female, age 91, right hemisphere 342.3
2685 Female, age 94, left hemisphere 243.8
2827 Female, age 67, right hemisphere 204.2
2110 Male, age 80, left hemisphere 203.0
1955 Male, age 76, both hemispheres 200.7
2609 Male, age 75, right hemisphere 117.7
Central amygdala
nTPM: 205.2
2239 Male, age 80, left hemisphere 292.4
2826 Female, age 94, left hemisphere 275.6
2701 Female, age 91, right hemisphere 199.9
1905 Male, age 76, both hemispheres 160.1
2515 Male, age 75, right hemisphere 97.8
Corticomedial amygdala
nTPM: 269.8
2535 Female, age 67, right hemisphere 412.2
2242 Female, age 91, right hemisphere 374.7
2429 Female, age 94, left hemisphere 267.2
2829 Male, age 80, left hemisphere 256.3
2240 Male, age 76, both hemispheres 194.1
2428 Male, age 75, right hemisphere 114.3
Lateral amygdala
nTPM: 194.8
2534 Female, age 94, left hemisphere 403.7
2256 Male, age 80, left hemisphere 202.0
1883 Male, age 76, both hemispheres 196.3
2255 Female, age 91, right hemisphere 188.0
2830 Female, age 67, right hemisphere 94.8
2516 Male, age 75, right hemisphere 84.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

211.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 211.9
Samples: 181

Max nTPM: 641.8
Min nTPM: 39.0
Std nTPM: 113.0
Median nTPM: 188.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 641.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 540.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 533.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 523.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 483.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 476.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 463.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 443.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 422.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 421.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 419.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 418.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 398.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 397.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 393.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 386.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 384.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 381.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 371.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 355.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 347.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 335.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 332.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 326.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 325.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 323.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 323.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 322.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 322.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 322.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 322.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 321.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 320.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 320.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 318.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 316.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 312.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 305.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 300.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 294.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 292.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 287.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 282.3
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 282.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 281.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 276.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 276.0
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 273.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 271.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 270.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 269.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 266.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 262.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 261.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 260.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 253.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 247.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 247.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 244.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 243.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 242.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 241.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 240.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 239.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 233.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 232.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 231.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 230.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 227.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 226.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 225.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 223.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 223.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 222.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 220.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 218.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 212.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 208.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 207.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 206.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 204.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 200.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 198.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 197.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 196.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 194.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 193.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 192.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 190.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 190.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 188.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 186.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 182.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 182.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 180.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 177.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 174.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 173.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 173.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 172.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 170.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 169.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 169.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 169.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 169.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 168.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 167.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 167.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 166.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 164.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 162.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 161.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 161.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 160.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 158.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 156.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 155.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 153.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 152.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 150.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 144.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 138.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 136.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 134.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 133.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 132.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 131.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 130.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 130.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 128.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 128.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 127.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 126.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 125.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 124.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 123.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 123.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 123.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 122.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 118.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 116.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 116.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 114.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 112.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 111.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 111.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 109.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 109.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 109.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 108.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 107.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 105.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 104.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 101.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 101.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 99.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 98.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 96.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 94.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 93.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 92.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 88.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 88.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 87.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 87.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 82.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 81.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 81.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 79.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 74.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 72.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 69.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 68.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 68.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 67.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 65.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 65.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 63.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 49.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 48.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 39.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

865.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 865.1
FF:10151-102I7 76 years, female 865.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

268.6
Pig sample Sample description nTPM
Amygdala
nTPM: 268.6
Samples: 4

Max nTPM: 429.8
Min nTPM: 174.1
Sample A Female 429.8
Sample B Female 174.1
Sample C Male 232.8
Sample D Male 237.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

332.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 332.5
Samples: 4

Max nTPM: 380.4
Min nTPM: 310.0
Sample A Male 319.9
Sample B Male 319.5
Sample C Female 380.4
Sample D Female 310.0

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