MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:88.8 nTPM
HPA Brain:209.9 nTPM
GTEx:88.8 nTPM
FANTOM5:68.9 Scaled Tags Per Million
Pig:237.0 nTPM
Mouse:169.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 209.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 118.4
1827 Male, age 72, unknown 177.7
2219 Male, age 76, both hemispheres 168.2
2666 Male, age 74, left hemisphere 159.9
2828 Female, age 72, unknown 123.4
2411 Female, age 72, unknown 116.7
1870 Female, age 42, unknown 112.8
1833 Male, age 53, unknown 97.4
1830 Male, age 51, unknown 86.4
2586 Male, age 75, left hemisphere 73.2
2019 Male, age 18, unknown 67.9
Dorsal raphe nucleus
nTPM: 120.3
2298 Female, age 72, unknown 163.7
2750 Male, age 76, both hemispheres 134.2
2047 Male, age 72, unknown 117.9
1828 Male, age 53, unknown 93.0
2016 Female, age 72, unknown 92.9
Inferior colliculus
nTPM: 127.0
2097 Female, age 72, unknown 165.2
2849 Male, age 72, unknown 133.6
1848 Female, age 42, unknown 110.0
1890 Male, age 53, unknown 99.1
Median raphe nucleus
nTPM: 209.9
2220 Male, age 76, midline 209.9
Periaquaductal grey, anterior
nTPM: 154.3
1795 Male, age 51, unknown 177.0
1947 Male, age 18, unknown 143.4
2502 Female, age 75, unknown 142.6
Periaquaductal grey, dorsal
nTPM: 127.3
2850 Male, age 76, both hemispheres 163.3
1840 Male, age 53, unknown 142.4
1831 Male, age 72, unknown 103.8
2464 Female, age 72, unknown 99.9
Periaquaductal grey, lateral
nTPM: 137.2
2272 Male, age 74, both hemispheres 147.3
2140 Male, age 76, both hemispheres 146.1
2053 Male, age 18, unknown 118.1
Pretectal area
nTPM: 145.8
1816 Male, age 51, unknown 210.3
2224 Female, age 72, unknown 194.1
1944 Female, age 72, unknown 168.6
1815 Male, age 53, unknown 159.1
1817 Female, age 42, unknown 156.9
2007 Male, age 72, unknown 151.8
2825 Male, age 18, unknown 132.1
2273 Male, age 74, both hemispheres 116.3
2316 Male, age 76, right hemisphere 108.5
2667 Female, age 75, unknown 108.2
2407 Male, age 75, both hemispheres 97.9
Red nucleus
nTPM: 51.2
2584 Male, age 75, left hemisphere 90.7
2785 Male, age 18, unknown 83.8
2725 Female, age 75, unknown 79.4
2227 Male, age 72, unknown 48.9
2769 Male, age 72, unknown 45.7
2588 Male, age 74, left hemisphere 43.6
1954 Female, age 42, unknown 41.1
1821 Female, age 72, unknown 40.1
2503 Female, age 72, unknown 39.5
1865 Male, age 51, unknown 34.9
2823 Male, age 76, right hemisphere 33.7
1904 Male, age 53, unknown 33.3
Substantia nigra
nTPM: 128.8
1916 Female, age 42, unknown 195.2
1941 Male, age 53, unknown 172.1
2665 Male, age 74, both hemispheres 165.8
1889 Female, age 72, unknown 138.6
1851 Male, age 51, unknown 133.3
2699 Male, age 18, unknown 118.4
2241 Male, age 72, unknown 116.9
2409 Female, age 72, unknown 101.0
2590 Female, age 75, unknown 86.9
2583 Male, age 75, right hemisphere 60.3
Superior colliculus
nTPM: 123.0
1796 Male, age 53, unknown 185.4
2261 Male, age 18, unknown 156.4
2668 Female, age 75, unknown 144.2
2087 Female, age 72, unknown 135.7
1839 Male, age 51, unknown 118.5
1895 Male, age 76, right hemisphere 112.5
1913 Female, age 42, unknown 101.8
2587 Male, age 74, left hemisphere 97.1
2664 Male, age 75, both hemispheres 93.1
1995 Male, age 72, unknown 85.1
Ventral tegmental area
nTPM: 139.8
2218 Male, age 76, both hemispheres 213.2
1915 Female, age 42, unknown 147.9
1942 Male, age 51, unknown 131.2
2021 Male, age 53, unknown 127.9
2223 Female, age 72, unknown 114.5
2410 Female, age 72, unknown 104.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 88.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 88.8
Samples: 183

Max nTPM: 396.0
Min nTPM: 5.9
Std nTPM: 72.6
Median nTPM: 65.9
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 396.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 311.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 297.4
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 276.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 273.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 271.3
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 269.0
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 250.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 248.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 247.8
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 238.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 68.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 68.9
FF:10158-103A5 76 years, female 68.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 237.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 237.0
Samples: 4

Max nTPM: 367.0
Min nTPM: 80.5
Sample A Female 316.1
Sample B Female 184.5
Sample C Male 367.0
Sample D Male 80.5
Midbrain
nTPM: 188.2
Samples: 4

Max nTPM: 235.3
Min nTPM: 92.8
Sample A Female 92.8
Sample B Female 192.1
Sample C Male 235.3
Sample D Male 232.5
Periaqueductal gray
nTPM: 183.8
Samples: 3

Max nTPM: 246.2
Min nTPM: 149.6
Sample B Female 149.6
Sample C Male 246.2
Sample D Male 155.6
Superior colliculi
nTPM: 166.5
Samples: 4

Max nTPM: 195.8
Min nTPM: 82.6
Sample A Female 195.8
Sample B Female 82.6
Sample C Male 192.1
Sample D Male 195.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 169.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 169.6
Samples: 4

Max nTPM: 174.5
Min nTPM: 162.5
Sample A Male 174.5
Sample B Male 171.9
Sample C Female 169.5
Sample D Female 162.5

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