A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.2
nTPM
Monaco:
40.8
nTPM
Schmiedel:
131.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.2
HPA sample
nTPM
Memory B-cell nTPM: 2.4
Samples: 6
Max nTPM: 4.9
Min nTPM: 1.3
P10809_1017
2.4
P10809_1025
1.5
P10809_1044
4.9
P10809_1063
2.6
P10809_1092
1.6
P10809_1105
1.3
Naive B-cell nTPM: 3.2
Samples: 6
Max nTPM: 4.7
Min nTPM: 2.0
P10809_1011
3.5
P10809_1029
2.5
P10809_1048
4.7
P10809_1067
3.2
P10809_1091
3.1
P10809_1104
2.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 26.2
Samples: 4
Max nTPM: 34.2
Min nTPM: 20.0
RHH5310_R3677
27.5
RHH5218_R3590
20.0
RHH5247_R3619
23.1
RHH5276_R3648
34.2
Naive B-cell nTPM: 40.8
Samples: 4
Max nTPM: 53.1
Min nTPM: 30.4
RHH5308_R3675
37.7
RHH5216_R3588
42.0
RHH5245_R3617
53.1
RHH5274_R3646
30.4
Non-switched memory B-cell nTPM: 33.7
Samples: 4
Max nTPM: 38.1
Min nTPM: 25.1
RHH5309_R3676
38.1
RHH5217_R3589
25.1
RHH5246_R3618
36.4
RHH5275_R3647
35.1
Plasmablast nTPM: 12.9
Samples: 4
Max nTPM: 21.3
Min nTPM: 7.5
RHH5312_R3679
12.2
RHH5220_R3592
10.7
RHH5249_R3621
21.3
RHH5278_R3650
7.5
Switched memory B-cell nTPM: 27.6
Samples: 4
Max nTPM: 34.9
Min nTPM: 24.2
RHH5311_R3678
34.9
RHH5219_R3591
26.5
RHH5248_R3620
24.2
RHH5277_R3649
24.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
131.4
Schmiedel sample id
TPM
Naive B-cell TPM: 131.5
Samples: 91
Max TPM: 200.2
Min TPM: 83.0
B_CELL_NAIVE_1
200.2
B_CELL_NAIVE_2
196.9
B_CELL_NAIVE_3
193.7
B_CELL_NAIVE_4
177.2
B_CELL_NAIVE_5
174.7
B_CELL_NAIVE_6
173.7
B_CELL_NAIVE_7
172.4
B_CELL_NAIVE_8
168.4
B_CELL_NAIVE_9
165.6
B_CELL_NAIVE_10
162.6
B_CELL_NAIVE_11
162.4
B_CELL_NAIVE_12
162.2
B_CELL_NAIVE_13
157.0
B_CELL_NAIVE_14
156.9
B_CELL_NAIVE_15
153.0
B_CELL_NAIVE_16
151.1
B_CELL_NAIVE_17
149.1
B_CELL_NAIVE_18
148.8
B_CELL_NAIVE_19
147.6
B_CELL_NAIVE_20
147.2
B_CELL_NAIVE_21
145.5
B_CELL_NAIVE_22
145.1
B_CELL_NAIVE_23
143.6
B_CELL_NAIVE_24
141.5
B_CELL_NAIVE_25
140.4
B_CELL_NAIVE_26
139.1
B_CELL_NAIVE_27
139.1
B_CELL_NAIVE_28
138.1
B_CELL_NAIVE_29
137.7
B_CELL_NAIVE_30
136.3
B_CELL_NAIVE_31
136.1
B_CELL_NAIVE_32
135.6
B_CELL_NAIVE_33
135.1
B_CELL_NAIVE_34
135.1
B_CELL_NAIVE_35
134.8
B_CELL_NAIVE_36
134.7
B_CELL_NAIVE_37
131.0
B_CELL_NAIVE_38
130.7
B_CELL_NAIVE_39
130.2
B_CELL_NAIVE_40
130.1
B_CELL_NAIVE_41
130.1
B_CELL_NAIVE_42
129.3
B_CELL_NAIVE_43
129.2
B_CELL_NAIVE_44
129.0
B_CELL_NAIVE_45
128.5
B_CELL_NAIVE_46
128.3
B_CELL_NAIVE_47
128.1
B_CELL_NAIVE_48
128.0
B_CELL_NAIVE_49
127.8
B_CELL_NAIVE_50
126.9
B_CELL_NAIVE_51
126.7
B_CELL_NAIVE_52
124.8
B_CELL_NAIVE_53
123.9
B_CELL_NAIVE_54
122.7
B_CELL_NAIVE_55
122.3
B_CELL_NAIVE_56
122.2
B_CELL_NAIVE_57
121.8
B_CELL_NAIVE_58
121.5
B_CELL_NAIVE_59
121.3
B_CELL_NAIVE_60
121.1
B_CELL_NAIVE_61
120.6
B_CELL_NAIVE_62
120.5
B_CELL_NAIVE_63
120.3
B_CELL_NAIVE_64
120.1
B_CELL_NAIVE_65
119.5
B_CELL_NAIVE_66
118.8
B_CELL_NAIVE_67
118.7
B_CELL_NAIVE_68
118.1
B_CELL_NAIVE_69
118.0
B_CELL_NAIVE_70
118.0
B_CELL_NAIVE_71
117.4
B_CELL_NAIVE_72
117.1
B_CELL_NAIVE_73
116.6
B_CELL_NAIVE_74
112.5
B_CELL_NAIVE_75
111.4
B_CELL_NAIVE_76
111.2
B_CELL_NAIVE_77
110.5
B_CELL_NAIVE_78
109.2
B_CELL_NAIVE_79
109.1
B_CELL_NAIVE_80
107.0
B_CELL_NAIVE_81
105.9
B_CELL_NAIVE_82
105.9
B_CELL_NAIVE_83
104.4
B_CELL_NAIVE_84
103.3
B_CELL_NAIVE_85
101.6
B_CELL_NAIVE_86
100.2
B_CELL_NAIVE_87
99.4
B_CELL_NAIVE_88
99.3
B_CELL_NAIVE_89
85.8
B_CELL_NAIVE_90
84.8
B_CELL_NAIVE_91
83.0
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