A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.6
nTPM
Monaco:
39.9
nTPM
Schmiedel:
123.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.6
HPA sample
nTPM
NK-cell nTPM: 6.6
Samples: 6
Max nTPM: 12.7
Min nTPM: 1.6
P10809_1013
5.7
P10809_1033
1.6
P10809_1052
2.8
P10809_1071
9.4
P10809_1093
12.7
P10809_1103
7.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.9
Monaco sample
nTPM
NK-cell nTPM: 39.8
Samples: 4
Max nTPM: 49.8
Min nTPM: 32.9
RHH5316_R3683
37.4
RHH5224_R3596
49.8
RHH5253_R3625
39.3
RHH5282_R3654
32.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
123.7
Schmiedel sample id
TPM
NK-cell TPM: 123.7
Samples: 90
Max TPM: 236.6
Min TPM: 66.5
NK_1
236.6
NK_2
190.2
NK_3
185.9
NK_4
183.2
NK_5
183.2
NK_6
174.1
NK_7
173.0
NK_8
168.3
NK_9
160.2
NK_10
157.3
NK_11
156.7
NK_12
155.7
NK_13
154.4
NK_14
151.1
NK_15
149.5
NK_16
149.2
NK_17
148.9
NK_18
147.8
NK_19
146.8
NK_20
142.9
NK_21
140.9
NK_22
139.4
NK_23
138.6
NK_24
137.3
NK_25
136.7
NK_26
136.5
NK_27
136.4
NK_28
136.3
NK_29
136.3
NK_30
136.2
NK_31
134.4
NK_32
132.8
NK_33
132.1
NK_34
132.0
NK_35
129.9
NK_36
126.8
NK_37
126.4
NK_38
125.6
NK_39
125.3
NK_40
125.3
NK_41
124.8
NK_42
123.4
NK_43
120.6
NK_44
119.3
NK_45
119.0
NK_46
117.6
NK_47
117.2
NK_48
116.6
NK_49
114.8
NK_50
114.0
NK_51
111.6
NK_52
111.5
NK_53
111.5
NK_54
111.4
NK_55
111.2
NK_56
109.6
NK_57
109.4
NK_58
109.0
NK_59
108.9
NK_60
107.9
NK_61
107.3
NK_62
107.1
NK_63
106.6
NK_64
106.0
NK_65
106.0
NK_66
105.3
NK_67
104.9
NK_68
104.1
NK_69
103.7
NK_70
101.6
NK_71
101.4
NK_72
100.0
NK_73
98.6
NK_74
98.0
NK_75
97.8
NK_76
96.7
NK_77
96.7
NK_78
96.5
NK_79
96.0
NK_80
95.2
NK_81
94.8
NK_82
90.0
NK_83
89.5
NK_84
89.1
NK_85
88.9
NK_86
81.2
NK_87
79.8
NK_88
79.6
NK_89
77.2
NK_90
66.5
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
