A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.0
nTPM
Monaco:
42.4
nTPM
Schmiedel:
114.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.0
HPA sample
nTPM
Classical monocyte nTPM: 3.8
Samples: 6
Max nTPM: 4.4
Min nTPM: 2.9
P10809_1003
4.3
P10809_1020
4.2
P10809_1039
4.4
P10809_1058
2.9
P10809_1080
3.7
P10809_1107
3.3
Intermediate monocyte nTPM: 5.3
Samples: 6
Max nTPM: 12.3
Min nTPM: 2.3
P10809_1004
6.1
P10809_1023
2.3
P10809_1042
3.8
P10809_1061
12.3
P10809_1081
4.6
P10809_1108
2.6
Non-classical monocyte nTPM: 6.0
Samples: 5
Max nTPM: 9.3
Min nTPM: 3.7
P10809_1005
5.6
P10809_1053
6.8
P10809_1072
9.3
P10809_1082
3.7
P10809_1109
4.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.4
Monaco sample
nTPM
Classical monocyte nTPM: 39.5
Samples: 4
Max nTPM: 55.9
Min nTPM: 28.5
RHH5313_R3680
55.9
RHH5221_R3593
34.3
RHH5250_R3622
28.5
RHH5279_R3651
39.2
Intermediate monocyte nTPM: 42.4
Samples: 4
Max nTPM: 55.2
Min nTPM: 28.7
RHH5314_R3681
37.8
RHH5222_R3594
28.7
RHH5251_R3623
47.7
RHH5280_R3652
55.2
Non-classical monocyte nTPM: 37.4
Samples: 4
Max nTPM: 45.2
Min nTPM: 32.1
RHH5315_R3682
39.8
RHH5223_R3595
45.2
RHH5252_R3624
32.1
RHH5281_R3653
32.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
114.1
Schmiedel sample id
TPM
Classical monocyte TPM: 74.5
Samples: 91
Max TPM: 116.3
Min TPM: 44.7
MONOCYTES_1
116.3
MONOCYTES_2
102.6
MONOCYTES_3
100.5
MONOCYTES_4
98.2
MONOCYTES_5
97.4
MONOCYTES_6
94.5
MONOCYTES_7
94.2
MONOCYTES_8
93.6
MONOCYTES_9
93.0
MONOCYTES_10
93.0
MONOCYTES_11
92.6
MONOCYTES_12
92.4
MONOCYTES_13
91.2
MONOCYTES_14
91.2
MONOCYTES_15
91.0
MONOCYTES_16
91.0
MONOCYTES_17
90.8
MONOCYTES_18
90.4
MONOCYTES_19
88.7
MONOCYTES_20
87.6
MONOCYTES_21
87.2
MONOCYTES_22
86.5
MONOCYTES_23
85.9
MONOCYTES_24
85.8
MONOCYTES_25
85.7
MONOCYTES_26
82.8
MONOCYTES_27
80.7
MONOCYTES_28
80.2
MONOCYTES_29
80.0
MONOCYTES_30
79.9
MONOCYTES_31
79.8
MONOCYTES_32
79.4
MONOCYTES_33
78.7
MONOCYTES_34
78.3
MONOCYTES_35
78.3
MONOCYTES_36
78.2
MONOCYTES_37
78.0
MONOCYTES_38
77.5
MONOCYTES_39
76.1
MONOCYTES_40
75.4
MONOCYTES_41
75.3
MONOCYTES_42
74.6
MONOCYTES_43
74.2
MONOCYTES_44
73.8
MONOCYTES_45
73.8
MONOCYTES_46
73.5
MONOCYTES_47
72.8
MONOCYTES_48
72.8
MONOCYTES_49
72.6
MONOCYTES_50
72.6
MONOCYTES_51
71.8
MONOCYTES_52
71.6
MONOCYTES_53
70.5
MONOCYTES_54
70.2
MONOCYTES_55
69.3
MONOCYTES_56
69.1
MONOCYTES_57
68.4
MONOCYTES_58
68.4
MONOCYTES_59
68.0
MONOCYTES_60
67.9
MONOCYTES_61
67.9
MONOCYTES_62
67.7
MONOCYTES_63
67.6
MONOCYTES_64
67.2
MONOCYTES_65
66.2
MONOCYTES_66
66.2
MONOCYTES_67
65.8
MONOCYTES_68
65.2
MONOCYTES_69
64.4
MONOCYTES_70
64.1
MONOCYTES_71
62.8
MONOCYTES_72
62.8
MONOCYTES_73
62.5
MONOCYTES_74
62.4
MONOCYTES_75
62.1
MONOCYTES_76
60.5
MONOCYTES_77
59.9
MONOCYTES_78
59.8
MONOCYTES_79
58.5
MONOCYTES_80
57.2
MONOCYTES_81
56.2
MONOCYTES_82
56.1
MONOCYTES_83
56.0
MONOCYTES_84
55.5
MONOCYTES_85
54.5
MONOCYTES_86
52.5
MONOCYTES_87
52.0
MONOCYTES_88
50.3
MONOCYTES_89
50.1
MONOCYTES_90
48.9
MONOCYTES_91
44.7
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Non-classical monocyte TPM: 114.1
Samples: 90
Max TPM: 178.4
Min TPM: 65.4
M2_1
178.4
M2_2
170.1
M2_3
169.8
M2_4
164.4
M2_5
155.8
M2_6
150.6
M2_7
150.1
M2_8
148.2
M2_9
143.9
M2_10
143.2
M2_11
142.6
M2_12
142.1
M2_13
139.3
M2_14
138.1
M2_15
137.3
M2_16
134.5
M2_17
131.3
M2_18
131.1
M2_19
130.9
M2_20
128.7
M2_21
128.6
M2_22
127.7
M2_23
126.0
M2_24
125.1
M2_25
123.5
M2_26
123.1
M2_27
122.8
M2_28
122.1
M2_29
121.8
M2_30
121.4
M2_31
121.1
M2_32
120.9
M2_33
119.0
M2_34
118.2
M2_35
117.3
M2_36
116.6
M2_37
116.6
M2_38
116.4
M2_39
115.3
M2_40
113.5
M2_41
113.5
M2_42
113.4
M2_43
113.2
M2_44
113.2
M2_45
112.9
M2_46
112.6
M2_47
112.3
M2_48
112.2
M2_49
111.9
M2_50
109.4
M2_51
107.8
M2_52
107.2
M2_53
107.1
M2_54
106.8
M2_55
106.7
M2_56
105.5
M2_57
104.1
M2_58
103.2
M2_59
103.0
M2_60
103.0
M2_61
102.4
M2_62
101.3
M2_63
101.0
M2_64
100.1
M2_65
99.2
M2_66
97.5
M2_67
97.4
M2_68
97.1
M2_69
97.1
M2_70
96.2
M2_71
96.1
M2_72
95.5
M2_73
94.8
M2_74
94.7
M2_75
94.5
M2_76
93.0
M2_77
91.0
M2_78
90.8
M2_79
90.4
M2_80
89.9
M2_81
89.5
M2_82
89.3
M2_83
89.2
M2_84
87.3
M2_85
85.6
M2_86
84.5
M2_87
83.6
M2_88
79.0
M2_89
72.2
M2_90
65.4
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