MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.4 nTPM
HPA Brain:49.9 nTPM
GTEx:16.4 nTPM
FANTOM5:13.7 Scaled Tags Per Million
Pig:25.7 nTPM
Mouse:8.6 nTPM
Allen mouse:4.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 49.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.4
2586 Male, age 75, left hemisphere 58.7
1870 Female, age 42, unknown 49.9
2828 Female, age 72, unknown 49.0
1833 Male, age 53, unknown 48.5
1830 Male, age 51, unknown 46.4
2019 Male, age 18, unknown 43.3
2666 Male, age 74, left hemisphere 43.0
2411 Female, age 72, unknown 42.7
1827 Male, age 72, unknown 36.6
2219 Male, age 76, both hemispheres 36.3
Dorsal raphe nucleus
nTPM: 37.3
2750 Male, age 76, both hemispheres 42.2
1828 Male, age 53, unknown 39.4
2047 Male, age 72, unknown 36.7
2016 Female, age 72, unknown 35.8
2298 Female, age 72, unknown 32.3
Inferior colliculus
nTPM: 35.7
2849 Male, age 72, unknown 39.2
1890 Male, age 53, unknown 37.7
1848 Female, age 42, unknown 37.1
2097 Female, age 72, unknown 28.8
Median raphe nucleus
nTPM: 29.4
2220 Male, age 76, midline 29.4
Periaquaductal grey, anterior
nTPM: 38.6
1947 Male, age 18, unknown 40.8
2502 Female, age 75, unknown 40.4
1795 Male, age 51, unknown 34.6
Periaquaductal grey, dorsal
nTPM: 32.1
2464 Female, age 72, unknown 37.3
1831 Male, age 72, unknown 32.3
2850 Male, age 76, both hemispheres 32.0
1840 Male, age 53, unknown 27.0
Periaquaductal grey, lateral
nTPM: 36.4
2140 Male, age 76, both hemispheres 37.2
2053 Male, age 18, unknown 36.9
2272 Male, age 74, both hemispheres 35.2
Pretectal area
nTPM: 35.9
2316 Male, age 76, right hemisphere 41.8
1817 Female, age 42, unknown 40.0
1815 Male, age 53, unknown 39.5
2007 Male, age 72, unknown 38.3
2667 Female, age 75, unknown 37.3
2224 Female, age 72, unknown 36.9
2825 Male, age 18, unknown 36.9
2407 Male, age 75, both hemispheres 34.6
1944 Female, age 72, unknown 33.7
1816 Male, age 51, unknown 28.6
2273 Male, age 74, both hemispheres 27.3
Red nucleus
nTPM: 49.9
1865 Male, age 51, unknown 57.6
2769 Male, age 72, unknown 56.9
1904 Male, age 53, unknown 54.8
2227 Male, age 72, unknown 53.8
2588 Male, age 74, left hemisphere 52.8
2823 Male, age 76, right hemisphere 50.4
1954 Female, age 42, unknown 49.1
2785 Male, age 18, unknown 47.3
2584 Male, age 75, left hemisphere 45.0
1821 Female, age 72, unknown 44.2
2503 Female, age 72, unknown 43.6
2725 Female, age 75, unknown 43.1
Substantia nigra
nTPM: 38.2
2665 Male, age 74, both hemispheres 46.2
2699 Male, age 18, unknown 44.4
2583 Male, age 75, right hemisphere 41.8
1851 Male, age 51, unknown 41.7
1889 Female, age 72, unknown 41.0
2409 Female, age 72, unknown 40.3
2590 Female, age 75, unknown 34.6
1916 Female, age 42, unknown 34.0
1941 Male, age 53, unknown 31.1
2241 Male, age 72, unknown 27.3
Superior colliculus
nTPM: 39.6
1995 Male, age 72, unknown 45.3
2668 Female, age 75, unknown 45.1
1913 Female, age 42, unknown 43.8
1839 Male, age 51, unknown 40.5
2664 Male, age 75, both hemispheres 40.1
1895 Male, age 76, right hemisphere 40.0
1796 Male, age 53, unknown 37.5
2087 Female, age 72, unknown 35.7
2587 Male, age 74, left hemisphere 35.2
2261 Male, age 18, unknown 32.9
Ventral tegmental area
nTPM: 38.1
2223 Female, age 72, unknown 42.6
2410 Female, age 72, unknown 41.5
1942 Male, age 51, unknown 38.6
2021 Male, age 53, unknown 38.3
2218 Male, age 76, both hemispheres 36.0
1915 Female, age 42, unknown 31.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.4
Samples: 183

Max nTPM: 40.5
Min nTPM: 5.0
Std nTPM: 5.6
Median nTPM: 15.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 40.5
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 37.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 35.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 32.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 31.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 29.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 28.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 28.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 28.0
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 27.0
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 26.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 13.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.7
FF:10158-103A5 76 years, female 13.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 25.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.7
Samples: 4

Max nTPM: 32.5
Min nTPM: 19.1
Sample A Female 22.3
Sample B Female 32.5
Sample C Male 19.1
Sample D Male 29.0
Midbrain
nTPM: 20.7
Samples: 4

Max nTPM: 34.5
Min nTPM: 14.3
Sample A Female 34.5
Sample B Female 19.0
Sample C Male 15.1
Sample D Male 14.3
Periaqueductal gray
nTPM: 16.3
Samples: 3

Max nTPM: 16.7
Min nTPM: 16.0
Sample B Female 16.3
Sample C Male 16.7
Sample D Male 16.0
Superior colliculi
nTPM: 17.3
Samples: 4

Max nTPM: 21.5
Min nTPM: 14.1
Sample A Female 21.5
Sample B Female 14.1
Sample C Male 14.6
Sample D Male 18.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 8.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.6
Samples: 4

Max nTPM: 10.3
Min nTPM: 7.3
Sample A Male 10.3
Sample B Male 7.3
Sample C Female 9.2
Sample D Female 7.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.1
68744444 Antisense, RP_050203_02_H09, Mouse strain C57BL/6J (56 days, male) 4.1

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