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  • RPLP2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1403.7 nTPM
HPA Brain:572.4 nTPM
GTEx:1403.7 nTPM
FANTOM5:658.6 Scaled Tags Per Million
Pig:46.1 nTPM
Mouse:475.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

572.4
Sample id Sample description nTPM
Amygdala
nTPM: 539.2
2695 Female, age 67, right hemisphere 676.9
1987 Female, age 91, left hemisphere 546.4
2514 Male, age 75, right hemisphere 533.1
2517 Female, age 94, left hemisphere 508.2
2814 Male, age 76, right hemisphere 431.5
Basal amygdala
nTPM: 454.4
2827 Female, age 67, right hemisphere 683.4
2110 Male, age 80, left hemisphere 482.8
2609 Male, age 75, right hemisphere 446.0
2685 Female, age 94, left hemisphere 422.1
1955 Male, age 76, both hemispheres 362.4
2243 Female, age 91, right hemisphere 329.6
Central amygdala
nTPM: 517.8
2826 Female, age 94, left hemisphere 876.4
2515 Male, age 75, right hemisphere 552.8
1905 Male, age 76, both hemispheres 429.7
2239 Male, age 80, left hemisphere 394.0
2701 Female, age 91, right hemisphere 336.2
Corticomedial amygdala
nTPM: 397.8
2535 Female, age 67, right hemisphere 474.2
2428 Male, age 75, right hemisphere 472.3
2829 Male, age 80, left hemisphere 419.6
2242 Female, age 91, right hemisphere 344.7
2429 Female, age 94, left hemisphere 341.7
2240 Male, age 76, both hemispheres 334.6
Lateral amygdala
nTPM: 572.4
2830 Female, age 67, right hemisphere 909.9
2516 Male, age 75, right hemisphere 641.3
2534 Female, age 94, left hemisphere 635.1
2256 Male, age 80, left hemisphere 462.4
1883 Male, age 76, both hemispheres 396.8
2255 Female, age 91, right hemisphere 388.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1403.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1403.7
Samples: 181

Max nTPM: 3626.9
Min nTPM: 652.0
Std nTPM: 493.3
Median nTPM: 1300.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 3626.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 3214.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2909.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2790.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 2759.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2721.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2593.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2524.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2522.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2518.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2401.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2398.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 2245.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 2235.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2223.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 2139.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 2071.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 2024.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2012.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 1965.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1956.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 1929.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1908.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1844.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1842.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 1836.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1800.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1786.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 1784.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1779.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 1755.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1752.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 1750.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1720.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1690.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1674.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1673.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1671.4
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1667.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1644.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1624.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1618.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1605.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 1603.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1598.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 1567.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 1566.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1546.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1542.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1535.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1534.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1530.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1512.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1507.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1494.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1491.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1490.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1488.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1475.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1473.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1465.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1463.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1462.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 1460.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1460.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1457.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1457.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1451.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1441.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1439.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 1430.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 1418.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1406.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1389.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 1383.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1378.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1358.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 1352.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1352.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1349.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1345.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1344.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1334.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1333.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1323.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1321.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1313.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1307.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1303.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 1301.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1300.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1297.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1295.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1288.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1282.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1281.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 1273.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1272.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1267.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 1263.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1256.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1256.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1255.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1237.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1231.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1229.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1226.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1226.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1225.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1211.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 1202.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 1200.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1195.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1195.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1192.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 1187.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 1178.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1178.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1172.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1161.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1159.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1157.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1154.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 1149.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1148.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 1144.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1130.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1128.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 1125.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 1124.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 1124.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1097.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1095.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 1091.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 1082.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1080.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1076.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1071.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1063.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1060.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1058.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1046.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1019.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1012.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 1008.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1004.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1000.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 997.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 995.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 983.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 981.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 967.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 964.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 954.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 952.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 936.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 929.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 926.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 924.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 924.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 916.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 909.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 907.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 904.8
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 899.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 898.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 889.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 879.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 878.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 870.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 868.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 863.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 814.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 813.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 791.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 775.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 752.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 750.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 686.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 661.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 652.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

658.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 658.6
FF:10151-102I7 76 years, female 658.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.1
Pig sample Sample description nTPM
Amygdala
nTPM: 46.1
Samples: 4

Max nTPM: 61.5
Min nTPM: 25.3
Sample A Female 61.5
Sample B Female 48.5
Sample C Male 49.1
Sample D Male 25.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

475.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 475.8
Samples: 4

Max nTPM: 560.0
Min nTPM: 441.3
Sample A Male 449.5
Sample B Male 441.3
Sample C Female 560.0
Sample D Female 452.2

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