On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1503.4
nTPM
HPA Brain:
537.8
nTPM
GTEx:
1503.4
nTPM
FANTOM5:
943.0
Scaled Tags Per Million
Macaque:
184.8
nTPM
Mouse:
287.8
nTPM
Rat:
311.8
nTPM
Pig:
72.4
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
537.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 467.8
2586
Male, age 75, left hemisphere
527.4
2828
Female, age 72, unknown
518.8
2666
Male, age 74, left hemisphere
517.9
2411
Female, age 72, unknown
505.9
2019
Male, age 18, unknown
492.2
1870
Female, age 42, unknown
486.7
1830
Male, age 51, unknown
445.0
1833
Male, age 53, unknown
434.6
1827
Male, age 72, unknown
394.0
2219
Male, age 76, both hemispheres
356.0
Dorsal raphe nucleus nTPM: 483.3
2298
Female, age 72, unknown
576.3
2016
Female, age 72, unknown
500.5
2750
Male, age 76, both hemispheres
485.7
1828
Male, age 53, unknown
457.7
2047
Male, age 72, unknown
396.1
Inferior colliculus nTPM: 419.1
1890
Male, age 53, unknown
464.2
2097
Female, age 72, unknown
451.3
1848
Female, age 42, unknown
399.1
2849
Male, age 72, unknown
361.7
Median raphe nucleus nTPM: 408.6
2220
Male, age 76, midline
408.6
Periaquaductal grey, anterior nTPM: 497.8
2502
Female, age 75, unknown
611.0
1795
Male, age 51, unknown
458.7
1947
Male, age 18, unknown
423.8
Periaquaductal grey, dorsal nTPM: 414.0
1840
Male, age 53, unknown
460.3
1831
Male, age 72, unknown
429.7
2464
Female, age 72, unknown
395.7
2850
Male, age 76, both hemispheres
370.2
Periaquaductal grey, lateral nTPM: 423.9
2053
Male, age 18, unknown
449.5
2140
Male, age 76, both hemispheres
422.9
2272
Male, age 74, both hemispheres
399.2
Pretectal area nTPM: 419.5
2316
Male, age 76, right hemisphere
498.4
2224
Female, age 72, unknown
451.0
2007
Male, age 72, unknown
436.9
1817
Female, age 42, unknown
435.1
2273
Male, age 74, both hemispheres
431.7
1815
Male, age 53, unknown
430.6
2825
Male, age 18, unknown
408.9
1816
Male, age 51, unknown
403.4
1944
Female, age 72, unknown
390.4
2407
Male, age 75, both hemispheres
384.6
2667
Female, age 75, unknown
343.2
Red nucleus nTPM: 519.5
2503
Female, age 72, unknown
661.4
1904
Male, age 53, unknown
550.5
1865
Male, age 51, unknown
549.3
2227
Male, age 72, unknown
544.6
1821
Female, age 72, unknown
532.6
2769
Male, age 72, unknown
528.0
2725
Female, age 75, unknown
523.7
2785
Male, age 18, unknown
507.3
2588
Male, age 74, left hemisphere
483.0
2584
Male, age 75, left hemisphere
464.2
1954
Female, age 42, unknown
460.3
2823
Male, age 76, right hemisphere
428.7
Substantia nigra nTPM: 537.8
1851
Male, age 51, unknown
645.4
2699
Male, age 18, unknown
628.7
2665
Male, age 74, both hemispheres
600.7
2241
Male, age 72, unknown
591.1
1916
Female, age 42, unknown
576.2
2409
Female, age 72, unknown
575.1
2590
Female, age 75, unknown
505.8
1889
Female, age 72, unknown
451.3
1941
Male, age 53, unknown
411.9
2583
Male, age 75, right hemisphere
392.1
Superior colliculus nTPM: 478.2
1995
Male, age 72, unknown
594.9
2587
Male, age 74, left hemisphere
582.8
1913
Female, age 42, unknown
534.9
1796
Male, age 53, unknown
487.7
2668
Female, age 75, unknown
479.2
2664
Male, age 75, both hemispheres
442.5
1839
Male, age 51, unknown
432.9
2261
Male, age 18, unknown
427.8
2087
Female, age 72, unknown
427.4
1895
Male, age 76, right hemisphere
371.6
Ventral tegmental area nTPM: 516.4
1915
Female, age 42, unknown
626.0
2223
Female, age 72, unknown
540.1
2021
Male, age 53, unknown
525.4
1942
Male, age 51, unknown
501.1
2410
Female, age 72, unknown
494.6
2218
Male, age 76, both hemispheres
411.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1503.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 1503.4
Samples: 183
Max nTPM: 3653.2
Min nTPM: 453.9
Std nTPM: 548.6
Median nTPM: 1418.2
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
3653.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
3346.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
2964.5
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
2952.4
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
2808.6
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
2805.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
2788.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
2631.8
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
2506.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
2422.8
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
2394.5
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
2365.1
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
2339.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
2316.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
2302.4
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
2289.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
2264.3
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
2222.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
2195.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
2191.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
2177.8
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
2171.1
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
2169.6
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
2164.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
2116.5
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
2077.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
2071.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
2065.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
2062.6
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
2045.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
2025.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
2003.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
1997.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
1978.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
1975.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1967.9
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
1946.8
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
1935.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
1901.9
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
1895.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1893.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
1875.8
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
1853.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
1843.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
1839.5
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1795.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
1781.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
1781.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1775.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
1772.2
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
1758.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
1752.4
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
1749.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
1748.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
1740.6
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
1720.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
1710.1
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
1698.8
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
1690.6
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
1683.8
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
1683.3
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
1680.8
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
1680.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
1678.0
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
1674.9
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
1665.0
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
1607.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
1588.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
1582.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
1575.5
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
1572.1
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
1571.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
1570.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1564.2
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
1548.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1540.0
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
1532.0
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
1530.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
1529.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1503.2
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
1493.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
1492.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
1471.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
1469.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
1463.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
1456.4
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
1455.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
1442.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
1438.4
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
1428.4
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
1422.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
1418.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
1407.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
1404.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
1394.2
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
1392.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1378.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
1342.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
1340.4
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
1338.4
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
1336.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
1326.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
1315.9
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
1313.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1312.2
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
1275.9
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
1275.5
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
1274.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
1272.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
1267.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
1256.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
1245.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
1226.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
1224.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
1223.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
1223.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
1221.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
1219.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
1218.8
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
1213.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
1212.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1206.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
1203.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
1200.8
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
1198.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
1194.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
1192.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
1173.4
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
1169.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
1167.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
1160.6
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
1160.6
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
1126.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
1124.8
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
1121.5
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
1119.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
1111.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
1103.0
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
1090.4
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
1081.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
1081.0
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
1075.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
1074.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
1065.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
1056.8
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
1051.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
1046.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
1039.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
1036.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
1024.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
1005.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
994.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
989.1
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
988.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
978.6
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
966.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
954.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
954.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
949.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
946.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
939.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
930.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
925.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
922.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
921.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
917.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
914.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
909.5
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
895.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
867.9
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
860.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
825.5
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
796.7
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
790.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
774.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
727.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
726.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
713.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
707.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
588.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
583.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
481.1
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
453.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
184.8
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 184.8
Samples: 1
Max nTPM: 184.8
Min nTPM: 184.8
Sample A
184.8
Midbrain nTPM: 146.9
Samples: 1
Max nTPM: 146.9
Min nTPM: 146.9
Sample A
146.9
Superior colliculi nTPM: 148.5
Samples: 1
Max nTPM: 148.5
Min nTPM: 148.5
Sample A
148.5
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
72.4
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 72.4
Samples: 3
Max nTPM: 92.7
Min nTPM: 58.2
Sample A
Female
92.7
Sample B
Female
66.4
Sample C
Male
58.2
Midbrain nTPM: 52.2
Samples: 3
Max nTPM: 69.6
Min nTPM: 38.6
Sample B
Female
69.6
Sample C
Male
48.4
Sample D
Male
38.6
Periaqueductal gray nTPM: 51.5
Samples: 3
Max nTPM: 58.0
Min nTPM: 43.6
Sample B
Female
52.9
Sample C
Male
58.0
Sample D
Male
43.6
Superior colliculi nTPM: 65.4
Samples: 4
Max nTPM: 81.6
Min nTPM: 53.3
Sample A
Female
81.6
Sample B
Female
67.3
Sample C
Male
59.5
Sample D
Male
53.3
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
287.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 287.8
Samples: 4
Max nTPM: 314.2
Min nTPM: 258.5
Sample A
298.0
Sample B
314.2
Sample C
258.5
Sample D
280.5
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
311.8
Rat sample
Sample description
nTPM
Midbrain nTPM: 311.8
Samples: 4
Max nTPM: 325.6
Min nTPM: 292.4
Sample A
325.6
Sample A
292.4
Sample A
317.4
Sample A
311.8
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The Human Protein Atlas project is funded
