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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

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  • IMMUNE

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  • RPLP2
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:10764.9 nTPM
Monaco:1015.9 nTPM
Schmiedel:733.0 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

10764.9
HPA sample nTPM
Memory B-cell
nTPM: 10764.9
Samples: 6

Max nTPM: 12431.6
Min nTPM: 8399.2
P10809_1017 8399.2
P10809_1025 11590.8
P10809_1044 12431.6
P10809_1063 10347.0
P10809_1092 9795.5
P10809_1105 12025.6
Naive B-cell
nTPM: 9910.8
Samples: 6

Max nTPM: 10993.5
Min nTPM: 8227.8
P10809_1011 9512.9
P10809_1029 10841.7
P10809_1048 10019.5
P10809_1067 9869.3
P10809_1091 8227.8
P10809_1104 10993.5

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

1015.9
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 1015.9
Samples: 4

Max nTPM: 1646.3
Min nTPM: 277.9
RHH5310_R3677 846.6
RHH5218_R3590 277.9
RHH5247_R3619 1292.8
RHH5276_R3648 1646.3
Naive B-cell
nTPM: 1008.7
Samples: 4

Max nTPM: 1976.4
Min nTPM: 270.2
RHH5308_R3675 1020.8
RHH5216_R3588 270.2
RHH5245_R3617 1976.4
RHH5274_R3646 767.2
Non-switched memory B-cell
nTPM: 727.7
Samples: 4

Max nTPM: 1434.8
Min nTPM: 198.9
RHH5309_R3676 958.4
RHH5217_R3589 318.7
RHH5246_R3618 198.9
RHH5275_R3647 1434.8
Plasmablast
nTPM: 565.2
Samples: 4

Max nTPM: 784.3
Min nTPM: 299.9
RHH5312_R3679 784.3
RHH5220_R3592 299.9
RHH5249_R3621 470.3
RHH5278_R3650 706.1
Switched memory B-cell
nTPM: 755.8
Samples: 4

Max nTPM: 1227.9
Min nTPM: 479.1
RHH5311_R3678 798.0
RHH5219_R3591 518.3
RHH5248_R3620 479.1
RHH5277_R3649 1227.9

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

733.0
Schmiedel sample id TPM
Naive B-cell
TPM: 733.0
Samples: 91

Max TPM: 1256.9
Min TPM: 167.9
B_CELL_NAIVE_1 1256.9
B_CELL_NAIVE_2 1189.2
B_CELL_NAIVE_3 1177.9
B_CELL_NAIVE_4 1176.2
B_CELL_NAIVE_5 1150.6
B_CELL_NAIVE_6 1118.9
B_CELL_NAIVE_7 1110.8
B_CELL_NAIVE_8 1101.1
B_CELL_NAIVE_9 1067.2
B_CELL_NAIVE_10 1055.3
B_CELL_NAIVE_11 1044.0
B_CELL_NAIVE_12 1031.0
B_CELL_NAIVE_13 1025.7
B_CELL_NAIVE_14 1017.4
B_CELL_NAIVE_15 1004.4
B_CELL_NAIVE_16 998.9
B_CELL_NAIVE_17 992.4
B_CELL_NAIVE_18 985.7
B_CELL_NAIVE_19 962.2
B_CELL_NAIVE_20 934.4
B_CELL_NAIVE_21 931.9
B_CELL_NAIVE_22 927.1
B_CELL_NAIVE_23 922.2
B_CELL_NAIVE_24 919.0
B_CELL_NAIVE_25 907.8
B_CELL_NAIVE_26 907.0
B_CELL_NAIVE_27 903.6
B_CELL_NAIVE_28 899.8
B_CELL_NAIVE_29 897.4
B_CELL_NAIVE_30 894.6
B_CELL_NAIVE_31 892.3
B_CELL_NAIVE_32 889.4
B_CELL_NAIVE_33 884.5
B_CELL_NAIVE_34 880.7
B_CELL_NAIVE_35 877.1
B_CELL_NAIVE_36 877.0
B_CELL_NAIVE_37 868.1
B_CELL_NAIVE_38 821.3
B_CELL_NAIVE_39 818.5
B_CELL_NAIVE_40 808.4
B_CELL_NAIVE_41 800.2
B_CELL_NAIVE_42 798.5
B_CELL_NAIVE_43 776.2
B_CELL_NAIVE_44 771.8
B_CELL_NAIVE_45 761.0
B_CELL_NAIVE_46 757.0
B_CELL_NAIVE_47 754.8
B_CELL_NAIVE_48 753.7
B_CELL_NAIVE_49 742.7
B_CELL_NAIVE_50 736.8
B_CELL_NAIVE_51 735.8
B_CELL_NAIVE_52 734.6
B_CELL_NAIVE_53 729.9
B_CELL_NAIVE_54 719.6
B_CELL_NAIVE_55 680.0
B_CELL_NAIVE_56 660.9
B_CELL_NAIVE_57 659.1
B_CELL_NAIVE_58 649.4
B_CELL_NAIVE_59 644.2
B_CELL_NAIVE_60 643.3
B_CELL_NAIVE_61 642.8
B_CELL_NAIVE_62 619.6
B_CELL_NAIVE_63 605.1
B_CELL_NAIVE_64 591.7
B_CELL_NAIVE_65 572.5
B_CELL_NAIVE_66 562.4
B_CELL_NAIVE_67 555.4
B_CELL_NAIVE_68 545.1
B_CELL_NAIVE_69 543.0
B_CELL_NAIVE_70 536.3
B_CELL_NAIVE_71 508.7
B_CELL_NAIVE_72 488.1
B_CELL_NAIVE_73 482.9
B_CELL_NAIVE_74 478.1
B_CELL_NAIVE_75 465.4
B_CELL_NAIVE_76 459.6
B_CELL_NAIVE_77 432.2
B_CELL_NAIVE_78 389.6
B_CELL_NAIVE_79 387.7
B_CELL_NAIVE_80 367.1
B_CELL_NAIVE_81 342.2
B_CELL_NAIVE_82 335.6
B_CELL_NAIVE_83 334.8
B_CELL_NAIVE_84 324.0
B_CELL_NAIVE_85 280.9
B_CELL_NAIVE_86 255.6
B_CELL_NAIVE_87 223.6
B_CELL_NAIVE_88 201.9
B_CELL_NAIVE_89 191.6
B_CELL_NAIVE_90 171.0
B_CELL_NAIVE_91 167.9
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