A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4320.6
nTPM
Monaco:
306.1
nTPM
Schmiedel:
471.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4320.6
HPA sample
nTPM
NK-cell nTPM: 4320.6
Samples: 6
Max nTPM: 5609.3
Min nTPM: 1891.2
P10809_1013
3935.8
P10809_1033
5451.1
P10809_1052
4468.0
P10809_1071
4567.9
P10809_1093
1891.2
P10809_1103
5609.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
306.1
Monaco sample
nTPM
NK-cell nTPM: 306.1
Samples: 4
Max nTPM: 359.2
Min nTPM: 194.5
RHH5316_R3683
359.2
RHH5224_R3596
194.5
RHH5253_R3625
350.4
RHH5282_R3654
320.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
471.9
Schmiedel sample id
TPM
NK-cell TPM: 471.9
Samples: 90
Max TPM: 839.3
Min TPM: 172.8
NK_1
839.3
NK_2
759.8
NK_3
740.1
NK_4
735.9
NK_5
676.3
NK_6
666.3
NK_7
643.0
NK_8
637.7
NK_9
630.5
NK_10
626.5
NK_11
626.3
NK_12
622.5
NK_13
619.3
NK_14
615.7
NK_15
614.2
NK_16
610.5
NK_17
608.2
NK_18
608.1
NK_19
599.9
NK_20
597.9
NK_21
591.6
NK_22
581.0
NK_23
580.6
NK_24
575.3
NK_25
575.2
NK_26
574.4
NK_27
562.8
NK_28
562.6
NK_29
559.8
NK_30
554.5
NK_31
552.1
NK_32
546.7
NK_33
543.7
NK_34
539.0
NK_35
535.2
NK_36
530.8
NK_37
524.9
NK_38
521.0
NK_39
508.4
NK_40
491.4
NK_41
489.2
NK_42
483.0
NK_43
475.2
NK_44
473.0
NK_45
472.1
NK_46
468.1
NK_47
465.5
NK_48
460.6
NK_49
454.8
NK_50
443.9
NK_51
443.4
NK_52
439.3
NK_53
435.7
NK_54
432.8
NK_55
431.4
NK_56
430.3
NK_57
415.9
NK_58
415.1
NK_59
411.1
NK_60
407.3
NK_61
400.6
NK_62
394.5
NK_63
394.0
NK_64
389.6
NK_65
385.7
NK_66
385.4
NK_67
384.8
NK_68
369.7
NK_69
368.9
NK_70
361.2
NK_71
360.4
NK_72
348.0
NK_73
339.6
NK_74
331.9
NK_75
321.9
NK_76
316.7
NK_77
310.7
NK_78
306.9
NK_79
295.1
NK_80
294.8
NK_81
291.0
NK_82
285.3
NK_83
274.3
NK_84
254.1
NK_85
238.5
NK_86
227.6
NK_87
222.7
NK_88
205.1
NK_89
203.3
NK_90
172.8
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