A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3925.5
nTPM
Monaco:
494.9
nTPM
Schmiedel:
424.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3925.5
HPA sample
nTPM
Classical monocyte nTPM: 3925.6
Samples: 6
Max nTPM: 6224.7
Min nTPM: 2523.8
P10809_1003
6224.7
P10809_1020
3201.4
P10809_1039
3119.3
P10809_1058
3719.2
P10809_1080
2523.8
P10809_1107
4765.0
Intermediate monocyte nTPM: 3138.9
Samples: 6
Max nTPM: 5258.6
Min nTPM: 1988.0
P10809_1004
2196.2
P10809_1023
3630.0
P10809_1042
2937.6
P10809_1061
1988.0
P10809_1081
2823.2
P10809_1108
5258.6
Non-classical monocyte nTPM: 2540.5
Samples: 5
Max nTPM: 3681.3
Min nTPM: 1869.4
P10809_1005
2463.6
P10809_1053
2279.1
P10809_1072
1869.4
P10809_1082
2409.1
P10809_1109
3681.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
494.9
Monaco sample
nTPM
Classical monocyte nTPM: 275.3
Samples: 4
Max nTPM: 365.2
Min nTPM: 212.4
RHH5313_R3680
365.2
RHH5221_R3593
255.0
RHH5250_R3622
212.4
RHH5279_R3651
268.6
Intermediate monocyte nTPM: 494.9
Samples: 4
Max nTPM: 631.7
Min nTPM: 306.0
RHH5314_R3681
511.2
RHH5222_R3594
530.6
RHH5251_R3623
631.7
RHH5280_R3652
306.0
Non-classical monocyte nTPM: 317.5
Samples: 4
Max nTPM: 417.9
Min nTPM: 169.4
RHH5315_R3682
417.9
RHH5223_R3595
290.2
RHH5252_R3624
392.6
RHH5281_R3653
169.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
424.3
Schmiedel sample id
TPM
Classical monocyte TPM: 424.3
Samples: 91
Max TPM: 860.6
Min TPM: 215.1
MONOCYTES_1
860.6
MONOCYTES_2
629.0
MONOCYTES_3
606.5
MONOCYTES_4
605.8
MONOCYTES_5
602.1
MONOCYTES_6
598.3
MONOCYTES_7
586.4
MONOCYTES_8
584.7
MONOCYTES_9
571.3
MONOCYTES_10
569.5
MONOCYTES_11
567.7
MONOCYTES_12
566.0
MONOCYTES_13
563.5
MONOCYTES_14
546.4
MONOCYTES_15
532.7
MONOCYTES_16
531.0
MONOCYTES_17
529.9
MONOCYTES_18
526.3
MONOCYTES_19
523.5
MONOCYTES_20
519.8
MONOCYTES_21
505.2
MONOCYTES_22
504.6
MONOCYTES_23
504.2
MONOCYTES_24
497.6
MONOCYTES_25
497.4
MONOCYTES_26
497.0
MONOCYTES_27
495.8
MONOCYTES_28
488.5
MONOCYTES_29
487.7
MONOCYTES_30
475.7
MONOCYTES_31
472.8
MONOCYTES_32
470.9
MONOCYTES_33
465.5
MONOCYTES_34
465.5
MONOCYTES_35
459.1
MONOCYTES_36
458.4
MONOCYTES_37
451.7
MONOCYTES_38
445.4
MONOCYTES_39
440.5
MONOCYTES_40
436.7
MONOCYTES_41
435.7
MONOCYTES_42
433.1
MONOCYTES_43
429.2
MONOCYTES_44
422.6
MONOCYTES_45
421.2
MONOCYTES_46
415.4
MONOCYTES_47
412.4
MONOCYTES_48
407.8
MONOCYTES_49
406.7
MONOCYTES_50
401.0
MONOCYTES_51
399.9
MONOCYTES_52
392.7
MONOCYTES_53
388.3
MONOCYTES_54
381.5
MONOCYTES_55
379.3
MONOCYTES_56
377.6
MONOCYTES_57
376.6
MONOCYTES_58
376.6
MONOCYTES_59
374.2
MONOCYTES_60
368.7
MONOCYTES_61
368.5
MONOCYTES_62
361.2
MONOCYTES_63
356.6
MONOCYTES_64
349.8
MONOCYTES_65
347.0
MONOCYTES_66
344.1
MONOCYTES_67
344.0
MONOCYTES_68
343.5
MONOCYTES_69
343.0
MONOCYTES_70
342.8
MONOCYTES_71
340.1
MONOCYTES_72
337.0
MONOCYTES_73
328.7
MONOCYTES_74
324.1
MONOCYTES_75
321.9
MONOCYTES_76
320.1
MONOCYTES_77
318.8
MONOCYTES_78
314.2
MONOCYTES_79
297.5
MONOCYTES_80
281.8
MONOCYTES_81
279.8
MONOCYTES_82
278.7
MONOCYTES_83
271.2
MONOCYTES_84
260.2
MONOCYTES_85
259.3
MONOCYTES_86
256.7
MONOCYTES_87
253.2
MONOCYTES_88
244.7
MONOCYTES_89
237.7
MONOCYTES_90
225.7
MONOCYTES_91
215.1
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Non-classical monocyte TPM: 325.6
Samples: 90
Max TPM: 702.8
Min TPM: 99.6
M2_1
702.8
M2_2
539.4
M2_3
539.4
M2_4
508.0
M2_5
471.6
M2_6
464.2
M2_7
462.0
M2_8
459.5
M2_9
456.5
M2_10
452.3
M2_11
445.6
M2_12
445.1
M2_13
445.0
M2_14
440.7
M2_15
439.6
M2_16
435.4
M2_17
427.9
M2_18
425.9
M2_19
411.5
M2_20
409.1
M2_21
403.8
M2_22
403.1
M2_23
402.4
M2_24
399.1
M2_25
396.5
M2_26
394.7
M2_27
393.2
M2_28
390.3
M2_29
388.5
M2_30
384.0
M2_31
373.4
M2_32
372.9
M2_33
368.9
M2_34
365.6
M2_35
360.9
M2_36
358.9
M2_37
354.8
M2_38
352.5
M2_39
352.4
M2_40
348.2
M2_41
343.5
M2_42
343.0
M2_43
341.4
M2_44
336.4
M2_45
335.0
M2_46
333.0
M2_47
330.3
M2_48
329.9
M2_49
329.0
M2_50
328.3
M2_51
325.3
M2_52
324.4
M2_53
321.7
M2_54
317.3
M2_55
311.8
M2_56
308.7
M2_57
305.6
M2_58
293.1
M2_59
287.6
M2_60
284.8
M2_61
280.8
M2_62
276.6
M2_63
268.4
M2_64
257.5
M2_65
257.0
M2_66
253.5
M2_67
248.1
M2_68
238.5
M2_69
235.9
M2_70
230.8
M2_71
222.1
M2_72
221.7
M2_73
217.8
M2_74
207.7
M2_75
205.0
M2_76
198.5
M2_77
192.5
M2_78
174.6
M2_79
171.9
M2_80
170.9
M2_81
170.0
M2_82
167.1
M2_83
164.8
M2_84
154.7
M2_85
142.3
M2_86
140.7
M2_87
124.8
M2_88
119.7
M2_89
114.0
M2_90
99.6
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