A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
57242.4
nTPM
Monaco:
4211.4
nTPM
Schmiedel:
2598.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
57242.4
HPA sample
nTPM
Memory B-cell nTPM: 57242.4
Samples: 6
Max nTPM: 92192.0
Min nTPM: 33947.6
P10809_1017
33947.6
P10809_1025
59708.6
P10809_1044
92192.0
P10809_1063
56961.5
P10809_1092
49522.1
P10809_1105
51122.8
Naive B-cell nTPM: 49010.9
Samples: 6
Max nTPM: 64464.8
Min nTPM: 29358.0
P10809_1011
29358.0
P10809_1029
50591.0
P10809_1048
64464.8
P10809_1067
52769.1
P10809_1091
45032.5
P10809_1104
51849.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4211.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 4211.4
Samples: 4
Max nTPM: 8473.2
Min nTPM: 861.1
RHH5310_R3677
2538.8
RHH5218_R3590
861.1
RHH5247_R3619
8473.2
RHH5276_R3648
4972.6
Naive B-cell nTPM: 3723.9
Samples: 4
Max nTPM: 7892.5
Min nTPM: 1168.2
RHH5308_R3675
3018.7
RHH5216_R3588
1168.2
RHH5245_R3617
7892.5
RHH5274_R3646
2816.3
Non-switched memory B-cell nTPM: 2728.8
Samples: 4
Max nTPM: 5149.2
Min nTPM: 1297.6
RHH5309_R3676
2869.3
RHH5217_R3589
1297.6
RHH5246_R3618
1599.2
RHH5275_R3647
5149.2
Plasmablast nTPM: 1317.6
Samples: 4
Max nTPM: 1556.8
Min nTPM: 677.5
RHH5312_R3679
1556.8
RHH5220_R3592
677.5
RHH5249_R3621
1486.5
RHH5278_R3650
1549.5
Switched memory B-cell nTPM: 2202.8
Samples: 4
Max nTPM: 3628.4
Min nTPM: 1445.0
RHH5311_R3678
2217.3
RHH5219_R3591
1520.5
RHH5248_R3620
1445.0
RHH5277_R3649
3628.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2598.4
Schmiedel sample id
TPM
Naive B-cell TPM: 2598.4
Samples: 91
Max TPM: 3170.1
Min TPM: 464.4
B_CELL_NAIVE_1
3170.1
B_CELL_NAIVE_2
3067.9
B_CELL_NAIVE_3
3052.6
B_CELL_NAIVE_4
3047.7
B_CELL_NAIVE_5
3041.6
B_CELL_NAIVE_6
3018.7
B_CELL_NAIVE_7
3011.2
B_CELL_NAIVE_8
2951.1
B_CELL_NAIVE_9
2942.8
B_CELL_NAIVE_10
2926.9
B_CELL_NAIVE_11
2919.8
B_CELL_NAIVE_12
2916.8
B_CELL_NAIVE_13
2912.0
B_CELL_NAIVE_14
2894.1
B_CELL_NAIVE_15
2894.1
B_CELL_NAIVE_16
2882.9
B_CELL_NAIVE_17
2875.0
B_CELL_NAIVE_18
2867.5
B_CELL_NAIVE_19
2866.4
B_CELL_NAIVE_20
2865.2
B_CELL_NAIVE_21
2864.9
B_CELL_NAIVE_22
2844.9
B_CELL_NAIVE_23
2842.0
B_CELL_NAIVE_24
2832.1
B_CELL_NAIVE_25
2830.1
B_CELL_NAIVE_26
2804.9
B_CELL_NAIVE_27
2793.4
B_CELL_NAIVE_28
2787.5
B_CELL_NAIVE_29
2764.1
B_CELL_NAIVE_30
2760.2
B_CELL_NAIVE_31
2735.0
B_CELL_NAIVE_32
2734.5
B_CELL_NAIVE_33
2731.7
B_CELL_NAIVE_34
2729.4
B_CELL_NAIVE_35
2723.6
B_CELL_NAIVE_36
2702.5
B_CELL_NAIVE_37
2702.0
B_CELL_NAIVE_38
2697.0
B_CELL_NAIVE_39
2683.1
B_CELL_NAIVE_40
2678.7
B_CELL_NAIVE_41
2678.1
B_CELL_NAIVE_42
2673.1
B_CELL_NAIVE_43
2670.5
B_CELL_NAIVE_44
2668.0
B_CELL_NAIVE_45
2660.7
B_CELL_NAIVE_46
2640.1
B_CELL_NAIVE_47
2596.4
B_CELL_NAIVE_48
2595.1
B_CELL_NAIVE_49
2577.7
B_CELL_NAIVE_50
2574.6
B_CELL_NAIVE_51
2564.4
B_CELL_NAIVE_52
2562.2
B_CELL_NAIVE_53
2559.4
B_CELL_NAIVE_54
2556.2
B_CELL_NAIVE_55
2554.2
B_CELL_NAIVE_56
2548.4
B_CELL_NAIVE_57
2541.7
B_CELL_NAIVE_58
2540.2
B_CELL_NAIVE_59
2535.6
B_CELL_NAIVE_60
2517.6
B_CELL_NAIVE_61
2493.3
B_CELL_NAIVE_62
2492.1
B_CELL_NAIVE_63
2489.9
B_CELL_NAIVE_64
2487.5
B_CELL_NAIVE_65
2484.7
B_CELL_NAIVE_66
2482.1
B_CELL_NAIVE_67
2434.6
B_CELL_NAIVE_68
2419.2
B_CELL_NAIVE_69
2418.8
B_CELL_NAIVE_70
2417.5
B_CELL_NAIVE_71
2409.3
B_CELL_NAIVE_72
2404.5
B_CELL_NAIVE_73
2382.0
B_CELL_NAIVE_74
2362.7
B_CELL_NAIVE_75
2357.9
B_CELL_NAIVE_76
2356.3
B_CELL_NAIVE_77
2343.1
B_CELL_NAIVE_78
2338.6
B_CELL_NAIVE_79
2337.5
B_CELL_NAIVE_80
2316.8
B_CELL_NAIVE_81
2310.7
B_CELL_NAIVE_82
2288.0
B_CELL_NAIVE_83
2278.9
B_CELL_NAIVE_84
2207.8
B_CELL_NAIVE_85
2160.6
B_CELL_NAIVE_86
2143.9
B_CELL_NAIVE_87
2142.7
B_CELL_NAIVE_88
2123.7
B_CELL_NAIVE_89
2004.6
B_CELL_NAIVE_90
1917.7
B_CELL_NAIVE_91
464.4
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