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BETA
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  • RPS27
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:57242.4 nTPM
Monaco:4211.4 nTPM
Schmiedel:2598.4 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

57242.4
HPA sample nTPM
Memory B-cell
nTPM: 57242.4
Samples: 6

Max nTPM: 92192.0
Min nTPM: 33947.6
P10809_1017 33947.6
P10809_1025 59708.6
P10809_1044 92192.0
P10809_1063 56961.5
P10809_1092 49522.1
P10809_1105 51122.8
Naive B-cell
nTPM: 49010.9
Samples: 6

Max nTPM: 64464.8
Min nTPM: 29358.0
P10809_1011 29358.0
P10809_1029 50591.0
P10809_1048 64464.8
P10809_1067 52769.1
P10809_1091 45032.5
P10809_1104 51849.9

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

4211.4
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 4211.4
Samples: 4

Max nTPM: 8473.2
Min nTPM: 861.1
RHH5310_R3677 2538.8
RHH5218_R3590 861.1
RHH5247_R3619 8473.2
RHH5276_R3648 4972.6
Naive B-cell
nTPM: 3723.9
Samples: 4

Max nTPM: 7892.5
Min nTPM: 1168.2
RHH5308_R3675 3018.7
RHH5216_R3588 1168.2
RHH5245_R3617 7892.5
RHH5274_R3646 2816.3
Non-switched memory B-cell
nTPM: 2728.8
Samples: 4

Max nTPM: 5149.2
Min nTPM: 1297.6
RHH5309_R3676 2869.3
RHH5217_R3589 1297.6
RHH5246_R3618 1599.2
RHH5275_R3647 5149.2
Plasmablast
nTPM: 1317.6
Samples: 4

Max nTPM: 1556.8
Min nTPM: 677.5
RHH5312_R3679 1556.8
RHH5220_R3592 677.5
RHH5249_R3621 1486.5
RHH5278_R3650 1549.5
Switched memory B-cell
nTPM: 2202.8
Samples: 4

Max nTPM: 3628.4
Min nTPM: 1445.0
RHH5311_R3678 2217.3
RHH5219_R3591 1520.5
RHH5248_R3620 1445.0
RHH5277_R3649 3628.4

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

2598.4
Schmiedel sample id TPM
Naive B-cell
TPM: 2598.4
Samples: 91

Max TPM: 3170.1
Min TPM: 464.4
B_CELL_NAIVE_1 3170.1
B_CELL_NAIVE_2 3067.9
B_CELL_NAIVE_3 3052.6
B_CELL_NAIVE_4 3047.7
B_CELL_NAIVE_5 3041.6
B_CELL_NAIVE_6 3018.7
B_CELL_NAIVE_7 3011.2
B_CELL_NAIVE_8 2951.1
B_CELL_NAIVE_9 2942.8
B_CELL_NAIVE_10 2926.9
B_CELL_NAIVE_11 2919.8
B_CELL_NAIVE_12 2916.8
B_CELL_NAIVE_13 2912.0
B_CELL_NAIVE_14 2894.1
B_CELL_NAIVE_15 2894.1
B_CELL_NAIVE_16 2882.9
B_CELL_NAIVE_17 2875.0
B_CELL_NAIVE_18 2867.5
B_CELL_NAIVE_19 2866.4
B_CELL_NAIVE_20 2865.2
B_CELL_NAIVE_21 2864.9
B_CELL_NAIVE_22 2844.9
B_CELL_NAIVE_23 2842.0
B_CELL_NAIVE_24 2832.1
B_CELL_NAIVE_25 2830.1
B_CELL_NAIVE_26 2804.9
B_CELL_NAIVE_27 2793.4
B_CELL_NAIVE_28 2787.5
B_CELL_NAIVE_29 2764.1
B_CELL_NAIVE_30 2760.2
B_CELL_NAIVE_31 2735.0
B_CELL_NAIVE_32 2734.5
B_CELL_NAIVE_33 2731.7
B_CELL_NAIVE_34 2729.4
B_CELL_NAIVE_35 2723.6
B_CELL_NAIVE_36 2702.5
B_CELL_NAIVE_37 2702.0
B_CELL_NAIVE_38 2697.0
B_CELL_NAIVE_39 2683.1
B_CELL_NAIVE_40 2678.7
B_CELL_NAIVE_41 2678.1
B_CELL_NAIVE_42 2673.1
B_CELL_NAIVE_43 2670.5
B_CELL_NAIVE_44 2668.0
B_CELL_NAIVE_45 2660.7
B_CELL_NAIVE_46 2640.1
B_CELL_NAIVE_47 2596.4
B_CELL_NAIVE_48 2595.1
B_CELL_NAIVE_49 2577.7
B_CELL_NAIVE_50 2574.6
B_CELL_NAIVE_51 2564.4
B_CELL_NAIVE_52 2562.2
B_CELL_NAIVE_53 2559.4
B_CELL_NAIVE_54 2556.2
B_CELL_NAIVE_55 2554.2
B_CELL_NAIVE_56 2548.4
B_CELL_NAIVE_57 2541.7
B_CELL_NAIVE_58 2540.2
B_CELL_NAIVE_59 2535.6
B_CELL_NAIVE_60 2517.6
B_CELL_NAIVE_61 2493.3
B_CELL_NAIVE_62 2492.1
B_CELL_NAIVE_63 2489.9
B_CELL_NAIVE_64 2487.5
B_CELL_NAIVE_65 2484.7
B_CELL_NAIVE_66 2482.1
B_CELL_NAIVE_67 2434.6
B_CELL_NAIVE_68 2419.2
B_CELL_NAIVE_69 2418.8
B_CELL_NAIVE_70 2417.5
B_CELL_NAIVE_71 2409.3
B_CELL_NAIVE_72 2404.5
B_CELL_NAIVE_73 2382.0
B_CELL_NAIVE_74 2362.7
B_CELL_NAIVE_75 2357.9
B_CELL_NAIVE_76 2356.3
B_CELL_NAIVE_77 2343.1
B_CELL_NAIVE_78 2338.6
B_CELL_NAIVE_79 2337.5
B_CELL_NAIVE_80 2316.8
B_CELL_NAIVE_81 2310.7
B_CELL_NAIVE_82 2288.0
B_CELL_NAIVE_83 2278.9
B_CELL_NAIVE_84 2207.8
B_CELL_NAIVE_85 2160.6
B_CELL_NAIVE_86 2143.9
B_CELL_NAIVE_87 2142.7
B_CELL_NAIVE_88 2123.7
B_CELL_NAIVE_89 2004.6
B_CELL_NAIVE_90 1917.7
B_CELL_NAIVE_91 464.4
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