A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
27733.5
nTPM
Monaco:
1311.9
nTPM
Schmiedel:
1469.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27733.5
HPA sample
nTPM
NK-cell nTPM: 27733.5
Samples: 6
Max nTPM: 42965.6
Min nTPM: 11459.7
P10809_1013
19945.5
P10809_1033
42965.6
P10809_1052
31214.3
P10809_1071
30333.2
P10809_1093
11459.7
P10809_1103
30482.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1311.9
Monaco sample
nTPM
NK-cell nTPM: 1311.9
Samples: 4
Max nTPM: 1512.6
Min nTPM: 821.2
RHH5316_R3683
1426.3
RHH5224_R3596
821.2
RHH5253_R3625
1487.6
RHH5282_R3654
1512.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1469.5
Schmiedel sample id
TPM
NK-cell TPM: 1469.5
Samples: 90
Max TPM: 2374.1
Min TPM: 956.9
NK_1
2374.1
NK_2
2203.4
NK_3
2090.2
NK_4
1998.4
NK_5
1945.3
NK_6
1938.3
NK_7
1923.7
NK_8
1906.6
NK_9
1887.0
NK_10
1837.6
NK_11
1835.4
NK_12
1811.6
NK_13
1797.9
NK_14
1782.5
NK_15
1775.0
NK_16
1749.4
NK_17
1696.3
NK_18
1677.5
NK_19
1663.3
NK_20
1659.4
NK_21
1650.6
NK_22
1650.1
NK_23
1637.8
NK_24
1617.8
NK_25
1600.0
NK_26
1597.3
NK_27
1583.2
NK_28
1561.9
NK_29
1561.5
NK_30
1556.6
NK_31
1526.8
NK_32
1526.8
NK_33
1524.0
NK_34
1506.8
NK_35
1503.3
NK_36
1496.5
NK_37
1496.0
NK_38
1495.4
NK_39
1481.9
NK_40
1462.9
NK_41
1462.2
NK_42
1453.2
NK_43
1449.0
NK_44
1443.2
NK_45
1441.3
NK_46
1435.9
NK_47
1434.5
NK_48
1431.2
NK_49
1427.9
NK_50
1421.5
NK_51
1387.6
NK_52
1385.9
NK_53
1368.2
NK_54
1364.9
NK_55
1360.7
NK_56
1358.5
NK_57
1347.0
NK_58
1337.9
NK_59
1328.8
NK_60
1320.9
NK_61
1319.1
NK_62
1318.2
NK_63
1315.5
NK_64
1309.2
NK_65
1304.9
NK_66
1274.5
NK_67
1272.8
NK_68
1265.3
NK_69
1264.2
NK_70
1263.3
NK_71
1256.4
NK_72
1252.0
NK_73
1251.3
NK_74
1233.4
NK_75
1223.2
NK_76
1220.0
NK_77
1217.0
NK_78
1182.9
NK_79
1176.6
NK_80
1148.6
NK_81
1142.2
NK_82
1130.7
NK_83
1127.4
NK_84
1098.5
NK_85
1077.5
NK_86
1059.3
NK_87
1051.0
NK_88
1002.9
NK_89
991.4
NK_90
956.9
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