A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
11535.2
nTPM
Monaco:
1472.2
nTPM
Schmiedel:
933.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11535.2
HPA sample
nTPM
Classical monocyte nTPM: 11535.2
Samples: 6
Max nTPM: 20082.3
Min nTPM: 7874.6
P10809_1003
20082.3
P10809_1020
9748.2
P10809_1039
10170.9
P10809_1058
9962.4
P10809_1080
7874.6
P10809_1107
11372.6
Intermediate monocyte nTPM: 11280.9
Samples: 6
Max nTPM: 14166.4
Min nTPM: 7063.4
P10809_1004
9483.4
P10809_1023
14166.4
P10809_1042
12621.2
P10809_1061
7063.4
P10809_1081
10201.1
P10809_1108
14150.2
Non-classical monocyte nTPM: 10677.0
Samples: 5
Max nTPM: 14336.0
Min nTPM: 7190.3
P10809_1005
9756.8
P10809_1053
11786.7
P10809_1072
7190.3
P10809_1082
10315.1
P10809_1109
14336.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1472.2
Monaco sample
nTPM
Classical monocyte nTPM: 716.9
Samples: 4
Max nTPM: 1031.5
Min nTPM: 417.0
RHH5313_R3680
1031.5
RHH5221_R3593
740.8
RHH5250_R3622
417.0
RHH5279_R3651
678.2
Intermediate monocyte nTPM: 1472.2
Samples: 4
Max nTPM: 2151.5
Min nTPM: 657.2
RHH5314_R3681
1235.4
RHH5222_R3594
2151.5
RHH5251_R3623
1844.7
RHH5280_R3652
657.2
Non-classical monocyte nTPM: 1230.9
Samples: 4
Max nTPM: 1640.6
Min nTPM: 572.9
RHH5315_R3682
1640.6
RHH5223_R3595
1459.0
RHH5252_R3624
1251.0
RHH5281_R3653
572.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
933.3
Schmiedel sample id
TPM
Classical monocyte TPM: 687.6
Samples: 91
Max TPM: 858.1
Min TPM: 552.6
MONOCYTES_1
858.1
MONOCYTES_2
833.2
MONOCYTES_3
825.1
MONOCYTES_4
819.3
MONOCYTES_5
819.2
MONOCYTES_6
811.9
MONOCYTES_7
787.4
MONOCYTES_8
784.5
MONOCYTES_9
774.8
MONOCYTES_10
772.0
MONOCYTES_11
771.5
MONOCYTES_12
771.1
MONOCYTES_13
761.1
MONOCYTES_14
755.5
MONOCYTES_15
754.1
MONOCYTES_16
753.5
MONOCYTES_17
749.4
MONOCYTES_18
743.8
MONOCYTES_19
743.0
MONOCYTES_20
739.4
MONOCYTES_21
736.5
MONOCYTES_22
736.2
MONOCYTES_23
731.5
MONOCYTES_24
728.2
MONOCYTES_25
727.1
MONOCYTES_26
726.5
MONOCYTES_27
725.6
MONOCYTES_28
725.3
MONOCYTES_29
724.1
MONOCYTES_30
723.9
MONOCYTES_31
720.4
MONOCYTES_32
717.2
MONOCYTES_33
709.0
MONOCYTES_34
706.7
MONOCYTES_35
702.1
MONOCYTES_36
701.7
MONOCYTES_37
701.4
MONOCYTES_38
700.8
MONOCYTES_39
700.7
MONOCYTES_40
700.7
MONOCYTES_41
700.4
MONOCYTES_42
698.5
MONOCYTES_43
694.1
MONOCYTES_44
693.6
MONOCYTES_45
687.5
MONOCYTES_46
686.2
MONOCYTES_47
685.6
MONOCYTES_48
683.6
MONOCYTES_49
683.2
MONOCYTES_50
682.6
MONOCYTES_51
681.7
MONOCYTES_52
680.0
MONOCYTES_53
678.6
MONOCYTES_54
677.3
MONOCYTES_55
676.4
MONOCYTES_56
675.9
MONOCYTES_57
670.2
MONOCYTES_58
667.3
MONOCYTES_59
665.9
MONOCYTES_60
665.1
MONOCYTES_61
662.6
MONOCYTES_62
656.7
MONOCYTES_63
648.8
MONOCYTES_64
645.1
MONOCYTES_65
643.6
MONOCYTES_66
639.4
MONOCYTES_67
626.3
MONOCYTES_68
626.0
MONOCYTES_69
625.9
MONOCYTES_70
619.9
MONOCYTES_71
619.4
MONOCYTES_72
619.0
MONOCYTES_73
616.4
MONOCYTES_74
615.4
MONOCYTES_75
612.6
MONOCYTES_76
612.5
MONOCYTES_77
610.3
MONOCYTES_78
608.2
MONOCYTES_79
607.3
MONOCYTES_80
607.0
MONOCYTES_81
606.6
MONOCYTES_82
606.3
MONOCYTES_83
593.6
MONOCYTES_84
591.8
MONOCYTES_85
591.1
MONOCYTES_86
590.1
MONOCYTES_87
588.2
MONOCYTES_88
575.1
MONOCYTES_89
574.4
MONOCYTES_90
569.0
MONOCYTES_91
552.6
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Non-classical monocyte TPM: 933.3
Samples: 90
Max TPM: 1212.3
Min TPM: 673.5
M2_1
1212.3
M2_2
1153.1
M2_3
1131.2
M2_4
1129.5
M2_5
1108.3
M2_6
1084.9
M2_7
1084.4
M2_8
1073.1
M2_9
1072.2
M2_10
1065.6
M2_11
1063.5
M2_12
1060.4
M2_13
1059.3
M2_14
1051.3
M2_15
1046.3
M2_16
1036.4
M2_17
1033.4
M2_18
1024.1
M2_19
1023.3
M2_20
1020.0
M2_21
1016.5
M2_22
1000.6
M2_23
997.9
M2_24
997.6
M2_25
997.2
M2_26
995.7
M2_27
993.6
M2_28
992.9
M2_29
988.1
M2_30
982.6
M2_31
974.0
M2_32
965.8
M2_33
965.8
M2_34
964.2
M2_35
960.8
M2_36
958.6
M2_37
955.0
M2_38
954.4
M2_39
952.1
M2_40
949.6
M2_41
948.8
M2_42
937.4
M2_43
932.9
M2_44
932.7
M2_45
932.6
M2_46
927.3
M2_47
925.2
M2_48
918.4
M2_49
913.9
M2_50
913.0
M2_51
912.3
M2_52
911.8
M2_53
910.5
M2_54
905.4
M2_55
904.5
M2_56
900.0
M2_57
893.4
M2_58
890.8
M2_59
889.8
M2_60
889.7
M2_61
885.7
M2_62
883.7
M2_63
880.7
M2_64
880.3
M2_65
877.5
M2_66
872.8
M2_67
872.3
M2_68
872.2
M2_69
867.6
M2_70
863.6
M2_71
857.5
M2_72
852.0
M2_73
845.5
M2_74
835.5
M2_75
834.9
M2_76
833.6
M2_77
833.4
M2_78
833.1
M2_79
817.7
M2_80
816.9
M2_81
799.7
M2_82
795.7
M2_83
776.2
M2_84
770.0
M2_85
765.6
M2_86
733.1
M2_87
730.2
M2_88
727.3
M2_89
721.8
M2_90
673.5
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