MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.3 nTPM
HPA Brain:49.5 nTPM
GTEx:24.3 nTPM
FANTOM5:26.1 Scaled Tags Per Million
Pig:31.0 nTPM
Mouse:31.0 nTPM
Allen mouse:0.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 49.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.4
2586 Male, age 75, left hemisphere 69.7
2019 Male, age 18, unknown 56.2
2828 Female, age 72, unknown 54.3
1870 Female, age 42, unknown 48.8
2219 Male, age 76, both hemispheres 45.6
1827 Male, age 72, unknown 45.2
2411 Female, age 72, unknown 44.2
2666 Male, age 74, left hemisphere 43.8
1830 Male, age 51, unknown 38.7
1833 Male, age 53, unknown 37.3
Dorsal raphe nucleus
nTPM: 41.7
2750 Male, age 76, both hemispheres 46.4
2047 Male, age 72, unknown 45.0
2298 Female, age 72, unknown 41.0
2016 Female, age 72, unknown 39.5
1828 Male, age 53, unknown 36.6
Inferior colliculus
nTPM: 35.0
1890 Male, age 53, unknown 37.3
1848 Female, age 42, unknown 36.1
2097 Female, age 72, unknown 34.5
2849 Male, age 72, unknown 32.2
Median raphe nucleus
nTPM: 42.0
2220 Male, age 76, midline 42.0
Periaquaductal grey, anterior
nTPM: 44.6
1795 Male, age 51, unknown 47.8
2502 Female, age 75, unknown 47.7
1947 Male, age 18, unknown 38.1
Periaquaductal grey, dorsal
nTPM: 36.4
1831 Male, age 72, unknown 41.1
2464 Female, age 72, unknown 38.5
1840 Male, age 53, unknown 37.0
2850 Male, age 76, both hemispheres 29.1
Periaquaductal grey, lateral
nTPM: 36.7
2053 Male, age 18, unknown 43.1
2272 Male, age 74, both hemispheres 33.6
2140 Male, age 76, both hemispheres 33.4
Pretectal area
nTPM: 49.5
1944 Female, age 72, unknown 67.6
1816 Male, age 51, unknown 66.0
2007 Male, age 72, unknown 65.0
1817 Female, age 42, unknown 54.7
2667 Female, age 75, unknown 51.1
1815 Male, age 53, unknown 49.6
2407 Male, age 75, both hemispheres 45.1
2224 Female, age 72, unknown 40.0
2825 Male, age 18, unknown 36.1
2316 Male, age 76, right hemisphere 34.7
2273 Male, age 74, both hemispheres 34.5
Red nucleus
nTPM: 43.6
2785 Male, age 18, unknown 56.2
2588 Male, age 74, left hemisphere 53.1
2584 Male, age 75, left hemisphere 50.5
2769 Male, age 72, unknown 42.9
1904 Male, age 53, unknown 42.3
2227 Male, age 72, unknown 41.2
2503 Female, age 72, unknown 41.0
2823 Male, age 76, right hemisphere 40.7
1954 Female, age 42, unknown 40.6
1821 Female, age 72, unknown 38.8
1865 Male, age 51, unknown 38.5
2725 Female, age 75, unknown 37.4
Substantia nigra
nTPM: 41.9
1941 Male, age 53, unknown 54.5
1889 Female, age 72, unknown 51.8
2665 Male, age 74, both hemispheres 47.9
2583 Male, age 75, right hemisphere 46.9
2590 Female, age 75, unknown 42.3
1916 Female, age 42, unknown 40.8
1851 Male, age 51, unknown 38.7
2409 Female, age 72, unknown 35.3
2241 Male, age 72, unknown 31.6
2699 Male, age 18, unknown 28.9
Superior colliculus
nTPM: 47.0
2261 Male, age 18, unknown 56.5
2664 Male, age 75, both hemispheres 55.9
2087 Female, age 72, unknown 55.0
1913 Female, age 42, unknown 46.6
2668 Female, age 75, unknown 45.6
1995 Male, age 72, unknown 43.8
1796 Male, age 53, unknown 43.5
2587 Male, age 74, left hemisphere 41.9
1895 Male, age 76, right hemisphere 41.8
1839 Male, age 51, unknown 39.1
Ventral tegmental area
nTPM: 40.3
1942 Male, age 51, unknown 47.2
2021 Male, age 53, unknown 42.6
1915 Female, age 42, unknown 42.2
2410 Female, age 72, unknown 39.9
2223 Female, age 72, unknown 35.3
2218 Male, age 76, both hemispheres 34.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 24.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.3
Samples: 183

Max nTPM: 54.2
Min nTPM: 10.0
Std nTPM: 6.0
Median nTPM: 23.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 54.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 48.2
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 39.5
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 38.4
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 35.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 35.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 35.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 34.7
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 34.2
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 34.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 33.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 26.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.1
FF:10158-103A5 76 years, female 26.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 31.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.5
Samples: 4

Max nTPM: 23.4
Min nTPM: 17.6
Sample A Female 23.4
Sample B Female 17.6
Sample C Male 23.1
Sample D Male 17.8
Midbrain
nTPM: 31.0
Samples: 4

Max nTPM: 55.8
Min nTPM: 20.6
Sample A Female 20.6
Sample B Female 22.0
Sample C Male 55.8
Sample D Male 25.6
Periaqueductal gray
nTPM: 19.6
Samples: 3

Max nTPM: 21.5
Min nTPM: 15.9
Sample B Female 21.4
Sample C Male 21.5
Sample D Male 15.9
Superior colliculi
nTPM: 27.6
Samples: 4

Max nTPM: 39.6
Min nTPM: 21.0
Sample A Female 23.8
Sample B Female 21.0
Sample C Male 39.6
Sample D Male 26.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 31.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.0
Samples: 4

Max nTPM: 32.2
Min nTPM: 30.0
Sample A Male 30.5
Sample B Male 32.2
Sample C Female 30.0
Sample D Female 31.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
75750475 Antisense, RP_060518_04_H05, Mouse strain C57BL/6J (56 days, male) 0.8
70805935 Antisense, RP_050725_02_E05, Mouse strain C57BL/6J (56 days, male) 0.7

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