A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.7
nTPM
Monaco:
23.4
nTPM
Schmiedel:
82.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.7
HPA sample
nTPM
Memory B-cell nTPM: 1.6
Samples: 6
Max nTPM: 2.1
Min nTPM: 1.0
P10809_1017
1.6
P10809_1025
1.6
P10809_1044
2.1
P10809_1063
1.0
P10809_1092
1.7
P10809_1105
1.3
Naive B-cell nTPM: 1.7
Samples: 6
Max nTPM: 3.5
Min nTPM: 0.8
P10809_1011
1.4
P10809_1029
1.4
P10809_1048
3.5
P10809_1067
0.8
P10809_1091
1.3
P10809_1104
1.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 15.5
Samples: 4
Max nTPM: 26.1
Min nTPM: 7.9
RHH5310_R3677
13.4
RHH5218_R3590
14.5
RHH5247_R3619
7.9
RHH5276_R3648
26.1
Naive B-cell nTPM: 14.4
Samples: 4
Max nTPM: 16.5
Min nTPM: 10.7
RHH5308_R3675
16.5
RHH5216_R3588
10.7
RHH5245_R3617
14.1
RHH5274_R3646
16.3
Non-switched memory B-cell nTPM: 14.8
Samples: 4
Max nTPM: 18.7
Min nTPM: 11.3
RHH5309_R3676
14.4
RHH5217_R3589
14.6
RHH5246_R3618
11.3
RHH5275_R3647
18.7
Plasmablast nTPM: 23.4
Samples: 4
Max nTPM: 28.6
Min nTPM: 19.3
RHH5312_R3679
19.3
RHH5220_R3592
28.6
RHH5249_R3621
23.1
RHH5278_R3650
22.7
Switched memory B-cell nTPM: 14.5
Samples: 4
Max nTPM: 17.6
Min nTPM: 12.3
RHH5311_R3678
17.6
RHH5219_R3591
13.6
RHH5248_R3620
12.3
RHH5277_R3649
14.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
82.7
Schmiedel sample id
TPM
Naive B-cell TPM: 82.7
Samples: 91
Max TPM: 109.7
Min TPM: 42.1
B_CELL_NAIVE_1
109.7
B_CELL_NAIVE_2
109.2
B_CELL_NAIVE_3
106.1
B_CELL_NAIVE_4
105.3
B_CELL_NAIVE_5
104.5
B_CELL_NAIVE_6
102.6
B_CELL_NAIVE_7
102.3
B_CELL_NAIVE_8
101.2
B_CELL_NAIVE_9
100.9
B_CELL_NAIVE_10
100.8
B_CELL_NAIVE_11
100.1
B_CELL_NAIVE_12
99.8
B_CELL_NAIVE_13
99.5
B_CELL_NAIVE_14
98.8
B_CELL_NAIVE_15
98.1
B_CELL_NAIVE_16
97.7
B_CELL_NAIVE_17
96.4
B_CELL_NAIVE_18
95.9
B_CELL_NAIVE_19
95.8
B_CELL_NAIVE_20
95.7
B_CELL_NAIVE_21
95.7
B_CELL_NAIVE_22
94.6
B_CELL_NAIVE_23
94.0
B_CELL_NAIVE_24
93.9
B_CELL_NAIVE_25
93.6
B_CELL_NAIVE_26
93.6
B_CELL_NAIVE_27
93.2
B_CELL_NAIVE_28
93.0
B_CELL_NAIVE_29
92.7
B_CELL_NAIVE_30
92.6
B_CELL_NAIVE_31
92.3
B_CELL_NAIVE_32
91.8
B_CELL_NAIVE_33
90.6
B_CELL_NAIVE_34
90.5
B_CELL_NAIVE_35
90.2
B_CELL_NAIVE_36
90.2
B_CELL_NAIVE_37
89.2
B_CELL_NAIVE_38
88.7
B_CELL_NAIVE_39
88.4
B_CELL_NAIVE_40
87.9
B_CELL_NAIVE_41
87.8
B_CELL_NAIVE_42
87.8
B_CELL_NAIVE_43
87.4
B_CELL_NAIVE_44
86.2
B_CELL_NAIVE_45
86.1
B_CELL_NAIVE_46
85.4
B_CELL_NAIVE_47
85.3
B_CELL_NAIVE_48
85.1
B_CELL_NAIVE_49
85.1
B_CELL_NAIVE_50
84.7
B_CELL_NAIVE_51
84.0
B_CELL_NAIVE_52
83.8
B_CELL_NAIVE_53
83.7
B_CELL_NAIVE_54
83.3
B_CELL_NAIVE_55
83.0
B_CELL_NAIVE_56
82.9
B_CELL_NAIVE_57
81.7
B_CELL_NAIVE_58
81.6
B_CELL_NAIVE_59
80.4
B_CELL_NAIVE_60
78.4
B_CELL_NAIVE_61
77.3
B_CELL_NAIVE_62
75.2
B_CELL_NAIVE_63
75.0
B_CELL_NAIVE_64
75.0
B_CELL_NAIVE_65
74.2
B_CELL_NAIVE_66
73.5
B_CELL_NAIVE_67
73.1
B_CELL_NAIVE_68
73.0
B_CELL_NAIVE_69
72.5
B_CELL_NAIVE_70
71.9
B_CELL_NAIVE_71
71.4
B_CELL_NAIVE_72
71.2
B_CELL_NAIVE_73
68.0
B_CELL_NAIVE_74
67.3
B_CELL_NAIVE_75
66.9
B_CELL_NAIVE_76
65.7
B_CELL_NAIVE_77
64.5
B_CELL_NAIVE_78
64.3
B_CELL_NAIVE_79
64.3
B_CELL_NAIVE_80
62.6
B_CELL_NAIVE_81
62.2
B_CELL_NAIVE_82
62.2
B_CELL_NAIVE_83
57.1
B_CELL_NAIVE_84
55.3
B_CELL_NAIVE_85
55.0
B_CELL_NAIVE_86
52.8
B_CELL_NAIVE_87
51.0
B_CELL_NAIVE_88
50.0
B_CELL_NAIVE_89
47.5
B_CELL_NAIVE_90
42.5
B_CELL_NAIVE_91
42.1
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