A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.6
nTPM
Monaco:
18.8
nTPM
Schmiedel:
155.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.6
HPA sample
nTPM
Classical monocyte nTPM: 1.9
Samples: 6
Max nTPM: 2.4
Min nTPM: 1.7
P10809_1003
1.9
P10809_1020
1.8
P10809_1039
1.7
P10809_1058
1.7
P10809_1080
1.8
P10809_1107
2.4
Intermediate monocyte nTPM: 2.6
Samples: 6
Max nTPM: 3.7
Min nTPM: 1.5
P10809_1004
3.2
P10809_1023
3.3
P10809_1042
1.5
P10809_1061
3.7
P10809_1081
2.4
P10809_1108
1.6
Non-classical monocyte nTPM: 2.1
Samples: 5
Max nTPM: 2.9
Min nTPM: 1.5
P10809_1005
2.2
P10809_1053
1.5
P10809_1072
2.9
P10809_1082
1.7
P10809_1109
2.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.8
Monaco sample
nTPM
Classical monocyte nTPM: 18.6
Samples: 4
Max nTPM: 21.7
Min nTPM: 15.6
RHH5313_R3680
18.6
RHH5221_R3593
21.7
RHH5250_R3622
15.6
RHH5279_R3651
18.4
Intermediate monocyte nTPM: 18.8
Samples: 4
Max nTPM: 22.2
Min nTPM: 16.0
RHH5314_R3681
16.0
RHH5222_R3594
19.0
RHH5251_R3623
22.2
RHH5280_R3652
17.9
Non-classical monocyte nTPM: 13.8
Samples: 4
Max nTPM: 20.5
Min nTPM: 9.3
RHH5315_R3682
13.6
RHH5223_R3595
9.3
RHH5252_R3624
20.5
RHH5281_R3653
11.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
155.3
Schmiedel sample id
TPM
Classical monocyte TPM: 155.3
Samples: 91
Max TPM: 258.2
Min TPM: 86.5
MONOCYTES_1
258.2
MONOCYTES_2
232.9
MONOCYTES_3
232.5
MONOCYTES_4
229.4
MONOCYTES_5
229.1
MONOCYTES_6
226.5
MONOCYTES_7
212.9
MONOCYTES_8
209.9
MONOCYTES_9
208.8
MONOCYTES_10
207.2
MONOCYTES_11
201.8
MONOCYTES_12
197.5
MONOCYTES_13
194.7
MONOCYTES_14
193.6
MONOCYTES_15
190.8
MONOCYTES_16
190.8
MONOCYTES_17
189.6
MONOCYTES_18
187.3
MONOCYTES_19
186.7
MONOCYTES_20
184.3
MONOCYTES_21
184.1
MONOCYTES_22
182.8
MONOCYTES_23
182.7
MONOCYTES_24
178.0
MONOCYTES_25
177.6
MONOCYTES_26
176.5
MONOCYTES_27
175.7
MONOCYTES_28
175.1
MONOCYTES_29
173.5
MONOCYTES_30
169.9
MONOCYTES_31
169.3
MONOCYTES_32
168.5
MONOCYTES_33
166.0
MONOCYTES_34
165.6
MONOCYTES_35
164.8
MONOCYTES_36
162.6
MONOCYTES_37
161.9
MONOCYTES_38
160.1
MONOCYTES_39
160.1
MONOCYTES_40
157.9
MONOCYTES_41
157.3
MONOCYTES_42
156.4
MONOCYTES_43
155.3
MONOCYTES_44
155.2
MONOCYTES_45
153.9
MONOCYTES_46
152.6
MONOCYTES_47
151.6
MONOCYTES_48
151.3
MONOCYTES_49
149.7
MONOCYTES_50
149.1
MONOCYTES_51
146.7
MONOCYTES_52
146.6
MONOCYTES_53
146.0
MONOCYTES_54
145.4
MONOCYTES_55
144.7
MONOCYTES_56
141.1
MONOCYTES_57
140.6
MONOCYTES_58
140.5
MONOCYTES_59
138.5
MONOCYTES_60
137.8
MONOCYTES_61
136.8
MONOCYTES_62
134.6
MONOCYTES_63
129.6
MONOCYTES_64
128.8
MONOCYTES_65
128.0
MONOCYTES_66
126.5
MONOCYTES_67
125.5
MONOCYTES_68
125.0
MONOCYTES_69
124.8
MONOCYTES_70
124.5
MONOCYTES_71
124.2
MONOCYTES_72
123.9
MONOCYTES_73
123.5
MONOCYTES_74
123.0
MONOCYTES_75
122.2
MONOCYTES_76
121.4
MONOCYTES_77
121.2
MONOCYTES_78
120.5
MONOCYTES_79
119.1
MONOCYTES_80
109.5
MONOCYTES_81
109.2
MONOCYTES_82
107.9
MONOCYTES_83
106.7
MONOCYTES_84
106.0
MONOCYTES_85
104.7
MONOCYTES_86
104.3
MONOCYTES_87
98.5
MONOCYTES_88
94.0
MONOCYTES_89
92.3
MONOCYTES_90
91.0
MONOCYTES_91
86.5
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Non-classical monocyte TPM: 76.0
Samples: 90
Max TPM: 122.5
Min TPM: 41.9
M2_1
122.5
M2_2
118.4
M2_3
106.7
M2_4
104.7
M2_5
103.9
M2_6
101.9
M2_7
97.6
M2_8
97.5
M2_9
96.5
M2_10
93.4
M2_11
93.0
M2_12
92.9
M2_13
91.6
M2_14
91.3
M2_15
90.9
M2_16
90.1
M2_17
89.1
M2_18
89.1
M2_19
88.7
M2_20
88.5
M2_21
88.4
M2_22
88.1
M2_23
87.8
M2_24
87.1
M2_25
86.3
M2_26
86.3
M2_27
86.2
M2_28
85.6
M2_29
83.5
M2_30
83.3
M2_31
83.1
M2_32
82.6
M2_33
82.1
M2_34
81.8
M2_35
80.1
M2_36
79.8
M2_37
78.5
M2_38
77.9
M2_39
77.8
M2_40
77.8
M2_41
77.2
M2_42
77.2
M2_43
76.2
M2_44
75.3
M2_45
75.2
M2_46
75.2
M2_47
74.6
M2_48
74.2
M2_49
73.8
M2_50
73.8
M2_51
73.2
M2_52
73.1
M2_53
73.1
M2_54
73.0
M2_55
72.3
M2_56
72.2
M2_57
71.1
M2_58
70.6
M2_59
70.0
M2_60
69.0
M2_61
69.0
M2_62
68.4
M2_63
68.2
M2_64
66.4
M2_65
66.0
M2_66
65.8
M2_67
65.3
M2_68
65.1
M2_69
64.9
M2_70
64.2
M2_71
63.6
M2_72
63.3
M2_73
63.3
M2_74
62.1
M2_75
60.3
M2_76
59.2
M2_77
59.2
M2_78
57.1
M2_79
56.8
M2_80
55.3
M2_81
54.9
M2_82
53.4
M2_83
51.6
M2_84
51.1
M2_85
50.6
M2_86
49.4
M2_87
48.6
M2_88
47.3
M2_89
45.2
M2_90
41.9
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