A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.7
nTPM
Monaco:
12.5
nTPM
Schmiedel:
85.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.7
HPA sample
nTPM
NK-cell nTPM: 1.7
Samples: 6
Max nTPM: 2.8
Min nTPM: 1.1
P10809_1013
1.4
P10809_1033
1.8
P10809_1052
1.1
P10809_1071
1.2
P10809_1093
2.8
P10809_1103
2.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.5
Monaco sample
nTPM
NK-cell nTPM: 12.5
Samples: 4
Max nTPM: 15.2
Min nTPM: 9.7
RHH5316_R3683
13.1
RHH5224_R3596
11.9
RHH5253_R3625
15.2
RHH5282_R3654
9.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
85.2
Schmiedel sample id
TPM
NK-cell TPM: 85.2
Samples: 90
Max TPM: 138.7
Min TPM: 52.1
NK_1
138.7
NK_2
130.1
NK_3
128.5
NK_4
126.2
NK_5
121.0
NK_6
120.6
NK_7
118.6
NK_8
116.9
NK_9
112.6
NK_10
111.2
NK_11
110.8
NK_12
110.1
NK_13
109.5
NK_14
108.0
NK_15
107.4
NK_16
107.1
NK_17
107.0
NK_18
103.7
NK_19
101.5
NK_20
101.2
NK_21
100.8
NK_22
100.3
NK_23
100.0
NK_24
98.7
NK_25
94.8
NK_26
92.4
NK_27
91.4
NK_28
91.2
NK_29
90.5
NK_30
90.1
NK_31
89.1
NK_32
88.6
NK_33
88.3
NK_34
88.3
NK_35
87.8
NK_36
87.0
NK_37
86.4
NK_38
85.9
NK_39
85.2
NK_40
84.8
NK_41
83.8
NK_42
83.6
NK_43
83.4
NK_44
83.3
NK_45
83.2
NK_46
83.0
NK_47
82.9
NK_48
82.1
NK_49
81.6
NK_50
81.1
NK_51
80.9
NK_52
80.7
NK_53
79.7
NK_54
79.3
NK_55
78.3
NK_56
77.3
NK_57
76.0
NK_58
75.3
NK_59
75.0
NK_60
73.3
NK_61
72.8
NK_62
72.8
NK_63
72.7
NK_64
72.4
NK_65
71.1
NK_66
70.9
NK_67
70.6
NK_68
70.4
NK_69
70.3
NK_70
70.3
NK_71
69.6
NK_72
68.8
NK_73
68.2
NK_74
67.8
NK_75
67.7
NK_76
67.6
NK_77
66.8
NK_78
66.2
NK_79
65.9
NK_80
63.8
NK_81
62.0
NK_82
60.7
NK_83
59.4
NK_84
59.2
NK_85
57.4
NK_86
57.0
NK_87
54.1
NK_88
54.1
NK_89
52.9
NK_90
52.1
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