HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:134.0 nTPM
HPA Brain:233.5 nTPM
GTEx:134.0 nTPM
FANTOM5:513.3 Scaled Tags Per Million
Pig:283.2 nTPM
Mouse:267.5 nTPM
Allen mouse:24.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA002242Antibody CAB001513Antibody CAB019952Antibody CAB080301
Glial cells Not detectedNot detectedLowHigh
Neuronal cells MediumMediumMediumHigh









HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 233.5
Sample id Sample description nTPM
Hippocampus
nTPM: 233.5
1898 Male, age 80, left hemisphere 271.5
2529 Female, age 94, left hemisphere 244.5
1911 Female, age 85, right hemisphere 227.2
2621 Female, age 67, right hemisphere 227.0
1855 Male, age 76, left hemisphere 217.8
2148 Female, age 91, left hemisphere 213.2
Dentate gyrus
nTPM: 227.9
2010 Male, age 76, both hemispheres 284.4
2528 Male, age 74, both hemispheres 233.4
2530 Female, age 94, left hemisphere 232.6
2246 Female, age 85, both hemispheres 226.0
1927 Female, age 91, both hemispheres 216.2
2531 Female, age 67, both hemispheres 174.9
Entorhinal gyrus
nTPM: 187.1
2117 Female, age 91, right hemisphere 245.8
1938 Female, age 85, left hemisphere 237.0
1787 Male, age 76, left hemisphere 191.4
2764 Male, age 80, right hemisphere 180.3
2613 Female, age 94, left hemisphere 136.1
2686 Male, age 75, right hemisphere 131.8
Hippocampus, CA1
nTPM: 233.2
1873 Female, age 85, both hemispheres 256.3
2527 Male, age 74, both hemispheres 242.3
2749 Male, age 80, left hemisphere 235.4
2045 Male, age 76, both hemispheres 226.2
2082 Female, age 91, right hemisphere 205.5
Hippocampus, CA2
nTPM: 228.9
2249 Male, age 74, both hemispheres 360.2
1963 Male, age 80, left hemisphere 234.1
2113 Female, age 91, right hemisphere 205.6
1892 Male, age 76, both hemispheres 200.2
1940 Female, age 85, left hemisphere 192.9
2437 Female, age 94, left hemisphere 180.2
Hippocampus, CA3
nTPM: 219.4
2436 Male, age 74, both hemispheres 350.5
1867 Male, age 76, both hemispheres 241.8
1891 Female, age 85, both hemispheres 194.7
2620 Female, age 94, left hemisphere 185.4
2137 Male, age 80, left hemisphere 185.1
2861 Female, age 67, both hemispheres 159.2
Parahippocampal cortex
nTPM: 190.6
2250 Female, age 67, right hemisphere 255.7
2018 Male, age 76, both hemispheres 221.7
1933 Female, age 85, both hemispheres 219.3
2245 Female, age 91, both hemispheres 217.3
1990 Female, age 91, right hemisphere 200.5
2532 Female, age 72, left hemisphere 187.4
2692 Male, age 74, both hemispheres 166.4
1850 Male, age 80, both hemispheres 165.8
2622 Female, age 67, right hemisphere 139.2
2693 Female, age 94, both hemispheres 132.8
Perirhinal gyrus
nTPM: 186.6
1847 Female, age 91, left hemisphere 208.6
1841 Female, age 85, right hemisphere 205.9
2521 Female, age 94, right hemisphere 184.7
1794 Male, age 80, right hemisphere 178.2
2848 Male, age 76, right hemisphere 155.8
Subiculum
nTPM: 216.0
2042 Male, age 76, both hemispheres 255.4
2729 Female, age 91, right hemisphere 231.0
1977 Female, age 85, both hemispheres 216.3
2438 Female, age 94, left hemisphere 203.3
1901 Male, age 80, both hemispheres 198.0
2619 Male, age 74, both hemispheres 191.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 134.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 134.0
Samples: 255

Max nTPM: 320.0
Min nTPM: 68.7
Std nTPM: 40.5
Median nTPM: 123.8
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 320.0
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 311.3
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 297.7
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 289.2
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 267.3
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 257.0
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 242.0
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 239.5
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 234.2
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 229.5
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 228.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 513.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 513.3
FF:10169-103B7 60 years, female 616.9
FF:10153-102I9 76 years, female 409.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 283.2
Pig sample Sample description nTPM
Subiculum
nTPM: 257.0
Samples: 4

Max nTPM: 306.5
Min nTPM: 225.3
Sample A Female 306.5
Sample B Female 242.5
Sample C Male 225.3
Sample D Male 253.5
Dorsal hippocampus
nTPM: 283.3
Samples: 4

Max nTPM: 355.7
Min nTPM: 223.6
Sample A Female 355.7
Sample B Female 276.8
Sample C Male 276.9
Sample D Male 223.6
Entorhinal cortex
nTPM: 267.4
Samples: 4

Max nTPM: 302.7
Min nTPM: 229.2
Sample A Female 302.7
Sample B Female 271.4
Sample C Male 266.1
Sample D Male 229.2
Ventral hippocampus
nTPM: 270.3
Samples: 4

Max nTPM: 318.3
Min nTPM: 188.2
Sample A Female 283.7
Sample B Female 188.2
Sample C Male 318.3
Sample D Male 291.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 267.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 256.3
Samples: 4

Max nTPM: 293.4
Min nTPM: 223.3
Sample A Male 223.3
Sample B Male 231.8
Sample C Female 276.5
Sample D Female 293.4
Hippocampal formation
nTPM: 267.5
Samples: 4

Max nTPM: 300.8
Min nTPM: 236.3
Sample A Male 243.5
Sample B Male 236.3
Sample C Female 289.2
Sample D Female 300.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 24.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 24.8
67978478 Antisense, RP_040923_01_C03, Mouse strain C57BL/6J (56 days, male) 24.8

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