HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:69.3 nTPM
HPA Brain:163.2 nTPM
GTEx:69.3 nTPM
FANTOM5:426.9 Scaled Tags Per Million
Pig:161.4 nTPM
Mouse:351.6 nTPM
Allen mouse:23.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 163.2
Sample id Sample description nTPM
Hippocampus
nTPM: 137.6
1898 Male, age 80, left hemisphere 182.0
2621 Female, age 67, right hemisphere 141.5
1855 Male, age 76, left hemisphere 140.7
2529 Female, age 94, left hemisphere 128.6
2148 Female, age 91, left hemisphere 126.0
1911 Female, age 85, right hemisphere 106.8
Dentate gyrus
nTPM: 139.7
1927 Female, age 91, both hemispheres 159.7
2530 Female, age 94, left hemisphere 156.6
2010 Male, age 76, both hemispheres 144.7
2246 Female, age 85, both hemispheres 140.6
2528 Male, age 74, both hemispheres 135.2
2531 Female, age 67, both hemispheres 101.3
Entorhinal gyrus
nTPM: 136.3
1938 Female, age 85, left hemisphere 160.9
2764 Male, age 80, right hemisphere 158.3
2613 Female, age 94, left hemisphere 157.0
1787 Male, age 76, left hemisphere 129.7
2117 Female, age 91, right hemisphere 114.3
2686 Male, age 75, right hemisphere 97.9
Hippocampus, CA1
nTPM: 163.2
2749 Male, age 80, left hemisphere 260.8
1873 Female, age 85, both hemispheres 163.1
2527 Male, age 74, both hemispheres 145.4
2045 Male, age 76, both hemispheres 133.2
2082 Female, age 91, right hemisphere 113.5
Hippocampus, CA2
nTPM: 138.6
1892 Male, age 76, both hemispheres 169.7
1963 Male, age 80, left hemisphere 166.0
2249 Male, age 74, both hemispheres 144.2
2437 Female, age 94, left hemisphere 136.8
2113 Female, age 91, right hemisphere 112.2
1940 Female, age 85, left hemisphere 103.0
Hippocampus, CA3
nTPM: 149.5
2436 Male, age 74, both hemispheres 207.0
2137 Male, age 80, left hemisphere 167.7
2620 Female, age 94, left hemisphere 158.0
1867 Male, age 76, both hemispheres 136.1
2861 Female, age 67, both hemispheres 116.9
1891 Female, age 85, both hemispheres 111.4
Parahippocampal cortex
nTPM: 127.7
2245 Female, age 91, both hemispheres 154.8
1850 Male, age 80, both hemispheres 151.5
1933 Female, age 85, both hemispheres 148.3
2250 Female, age 67, right hemisphere 139.3
1990 Female, age 91, right hemisphere 135.5
2693 Female, age 94, both hemispheres 121.6
2532 Female, age 72, left hemisphere 113.8
2692 Male, age 74, both hemispheres 106.2
2018 Male, age 76, both hemispheres 105.6
2622 Female, age 67, right hemisphere 100.5
Perirhinal gyrus
nTPM: 159.8
1847 Female, age 91, left hemisphere 199.7
1794 Male, age 80, right hemisphere 170.1
2521 Female, age 94, right hemisphere 165.7
1841 Female, age 85, right hemisphere 145.2
2848 Male, age 76, right hemisphere 118.2
Subiculum
nTPM: 121.2
1977 Female, age 85, both hemispheres 137.5
2438 Female, age 94, left hemisphere 136.6
1901 Male, age 80, both hemispheres 129.4
2619 Male, age 74, both hemispheres 127.9
2729 Female, age 91, right hemisphere 100.4
2042 Male, age 76, both hemispheres 95.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 69.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 69.3
Samples: 255

Max nTPM: 163.5
Min nTPM: 17.2
Std nTPM: 28.3
Median nTPM: 64.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 163.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 153.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 149.9
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 137.0
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 136.9
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 136.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 135.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 134.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 133.9
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 132.1
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 131.0
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 426.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 426.9
FF:10169-103B7 60 years, female 571.2
FF:10153-102I9 76 years, female 282.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 161.4
Pig sample Sample description nTPM
Subiculum
nTPM: 135.8
Samples: 4

Max nTPM: 166.3
Min nTPM: 117.6
Sample A Female 166.3
Sample B Female 120.4
Sample C Male 138.7
Sample D Male 117.6
Dorsal hippocampus
nTPM: 140.3
Samples: 4

Max nTPM: 181.2
Min nTPM: 104.0
Sample A Female 181.2
Sample B Female 158.6
Sample C Male 117.2
Sample D Male 104.0
Entorhinal cortex
nTPM: 107.8
Samples: 4

Max nTPM: 142.2
Min nTPM: 89.2
Sample A Female 142.2
Sample B Female 97.2
Sample C Male 102.5
Sample D Male 89.2
Ventral hippocampus
nTPM: 161.4
Samples: 4

Max nTPM: 212.0
Min nTPM: 97.2
Sample A Female 180.7
Sample B Female 97.2
Sample C Male 212.0
Sample D Male 155.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 351.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 320.0
Samples: 4

Max nTPM: 348.4
Min nTPM: 298.6
Sample A Male 298.6
Sample B Male 306.0
Sample C Female 326.8
Sample D Female 348.4
Hippocampal formation
nTPM: 351.6
Samples: 4

Max nTPM: 362.1
Min nTPM: 339.3
Sample A Male 339.3
Sample B Male 348.7
Sample C Female 356.2
Sample D Female 362.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 23.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 23.8
69015619 Antisense, RP_050315_01_D02, Mouse strain C57BL/6J (56 days, male) 23.8

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo