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  • MAGED1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:53.0 nTPM
HPA Brain:146.4 nTPM
GTEx:53.0 nTPM
FANTOM5:238.2 Scaled Tags Per Million
Pig:98.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

146.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 108.8
1981 Female, age 72, midline 134.4
2565 Male, age 75, midline 119.5
2194 Female, age 79, both hemispheres 108.9
2816 Male, age 47, midline 96.5
2048 Male, age 55, midline 84.7
Cervical spinal cord, dorsal horn
nTPM: 146.4
2721 Male, age 90, both hemispheres 184.4
2297 Male, age 75, both hemispheres 173.0
2069 Male, age 47, both hemispheres 164.5
2173 Female, age 72, unknown 125.2
1877 Male, age 55, unknown 125.1
2296 Male, age 66, both hemispheres 106.4
Cervical spinal cord, ventral horn
nTPM: 96.8
2295 Male, age 66, both hemispheres 116.1
2098 Female, age 72, unknown 115.7
2480 Male, age 75, both hemispheres 96.0
2068 Male, age 55, unknown 92.2
2809 Male, age 90, both hemispheres 81.4
2820 Female, age 79, both hemispheres 79.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

53.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 53.0
Samples: 204

Max nTPM: 111.7
Min nTPM: 22.6
Std nTPM: 13.8
Median nTPM: 51.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 111.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 100.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 100.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 86.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 85.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 82.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 80.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 75.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 75.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 75.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 75.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 75.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 74.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 74.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 74.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 72.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 72.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 71.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 70.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 70.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 69.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 68.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 68.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 67.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 67.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 67.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 66.7
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 66.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 66.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 65.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 65.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 64.9
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 64.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 64.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 64.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 64.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 64.1
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 64.0
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 63.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 63.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 63.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 63.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 63.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 63.0
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 62.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 61.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 61.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 61.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 61.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 61.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 61.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 61.3
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 61.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 60.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 60.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 59.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 59.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 59.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 58.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 58.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 58.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 58.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 57.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 57.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 57.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 57.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 57.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 57.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 57.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 57.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 56.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 56.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 56.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 56.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 56.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 56.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 56.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 55.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 55.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 55.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 55.1
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 54.9
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 54.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 54.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 54.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 54.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 54.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 53.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 53.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 53.8
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 53.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 53.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 53.4
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 53.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 52.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 52.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 52.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 52.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 51.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 51.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 51.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 51.5
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 51.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 51.4
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 51.1
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 51.0
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 51.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 50.9
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 50.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 50.6
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 50.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 50.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 50.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 50.1
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 50.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 50.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 49.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 49.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 49.6
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 49.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 49.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 49.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 49.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 49.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 49.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 49.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 49.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 48.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 48.4
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 48.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 48.3
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 48.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 48.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 48.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 47.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 47.6
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 47.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 47.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 47.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 46.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 46.6
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 46.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 46.4
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 45.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 45.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 45.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 45.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 44.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 44.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 44.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 44.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 44.6
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 44.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 44.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 44.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 44.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 43.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 43.6
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 43.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 43.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 42.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 42.7
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 42.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 42.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 42.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 41.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 41.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 41.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 41.3
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 41.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 41.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 41.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 41.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 41.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 40.9
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 40.7
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 40.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 39.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 39.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 39.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 38.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 37.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 36.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 36.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 36.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 35.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 34.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 34.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 34.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 32.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 31.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 31.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 30.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 29.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 29.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 29.7
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 29.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 27.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 27.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 27.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 26.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 25.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 25.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 22.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

238.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 238.2
FF:10181-103D1 60 years, female 302.1
FF:10159-103A6 76 years, female 174.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

98.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 98.7
Samples: 4

Max nTPM: 112.1
Min nTPM: 77.4
Sample A Female 112.1
Sample B Female 77.4
Sample C Male 96.4
Sample D Male 108.7
Ventral spinal cord
nTPM: 98.0
Samples: 4

Max nTPM: 118.4
Min nTPM: 84.5
Sample A Female 98.4
Sample B Female 90.5
Sample C Male 118.4
Sample D Male 84.5

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