MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:64.3 nTPM
HPA Brain:156.2 nTPM
GTEx:64.3 nTPM
FANTOM5:109.5 Scaled Tags Per Million
Pig:138.0 nTPM
Mouse:364.7 nTPM
Allen mouse:20.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 156.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 92.6
2219 Male, age 76, both hemispheres 116.4
1827 Male, age 72, unknown 115.7
2411 Female, age 72, unknown 103.4
2828 Female, age 72, unknown 97.4
1870 Female, age 42, unknown 97.2
2019 Male, age 18, unknown 89.2
1833 Male, age 53, unknown 82.6
2586 Male, age 75, left hemisphere 80.3
1830 Male, age 51, unknown 72.7
2666 Male, age 74, left hemisphere 71.0
Dorsal raphe nucleus
nTPM: 120.2
2298 Female, age 72, unknown 166.2
2047 Male, age 72, unknown 129.9
2750 Male, age 76, both hemispheres 118.5
1828 Male, age 53, unknown 101.7
2016 Female, age 72, unknown 84.5
Inferior colliculus
nTPM: 90.3
2097 Female, age 72, unknown 100.8
1848 Female, age 42, unknown 92.1
2849 Male, age 72, unknown 85.3
1890 Male, age 53, unknown 82.9
Median raphe nucleus
nTPM: 156.2
2220 Male, age 76, midline 156.2
Periaquaductal grey, anterior
nTPM: 96.3
1795 Male, age 51, unknown 111.9
1947 Male, age 18, unknown 97.9
2502 Female, age 75, unknown 79.1
Periaquaductal grey, dorsal
nTPM: 98.0
1840 Male, age 53, unknown 113.4
2850 Male, age 76, both hemispheres 106.2
1831 Male, age 72, unknown 90.5
2464 Female, age 72, unknown 82.2
Periaquaductal grey, lateral
nTPM: 106.4
2272 Male, age 74, both hemispheres 136.2
2140 Male, age 76, both hemispheres 94.6
2053 Male, age 18, unknown 88.4
Pretectal area
nTPM: 119.7
2224 Female, age 72, unknown 158.6
1816 Male, age 51, unknown 142.7
2007 Male, age 72, unknown 135.3
1944 Female, age 72, unknown 134.2
1817 Female, age 42, unknown 131.7
2667 Female, age 75, unknown 129.5
2273 Male, age 74, both hemispheres 126.0
1815 Male, age 53, unknown 113.3
2825 Male, age 18, unknown 94.5
2316 Male, age 76, right hemisphere 77.6
2407 Male, age 75, both hemispheres 73.3
Red nucleus
nTPM: 70.8
2725 Female, age 75, unknown 94.2
2785 Male, age 18, unknown 85.9
1821 Female, age 72, unknown 85.7
1954 Female, age 42, unknown 72.0
2503 Female, age 72, unknown 70.6
1904 Male, age 53, unknown 67.0
2769 Male, age 72, unknown 65.6
2823 Male, age 76, right hemisphere 65.2
2227 Male, age 72, unknown 64.6
1865 Male, age 51, unknown 61.5
2588 Male, age 74, left hemisphere 60.7
2584 Male, age 75, left hemisphere 57.2
Substantia nigra
nTPM: 115.2
1916 Female, age 42, unknown 164.4
1851 Male, age 51, unknown 129.8
1889 Female, age 72, unknown 125.2
2241 Male, age 72, unknown 120.2
1941 Male, age 53, unknown 119.9
2409 Female, age 72, unknown 116.3
2699 Male, age 18, unknown 108.4
2665 Male, age 74, both hemispheres 100.3
2590 Female, age 75, unknown 93.6
2583 Male, age 75, right hemisphere 73.4
Superior colliculus
nTPM: 91.5
1796 Male, age 53, unknown 120.1
2087 Female, age 72, unknown 112.2
2261 Male, age 18, unknown 111.1
2587 Male, age 74, left hemisphere 94.9
2668 Female, age 75, unknown 87.7
1839 Male, age 51, unknown 85.2
1895 Male, age 76, right hemisphere 84.9
1913 Female, age 42, unknown 79.5
2664 Male, age 75, both hemispheres 71.9
1995 Male, age 72, unknown 67.9
Ventral tegmental area
nTPM: 121.2
2218 Male, age 76, both hemispheres 143.4
1915 Female, age 42, unknown 137.2
2410 Female, age 72, unknown 128.4
1942 Male, age 51, unknown 109.7
2021 Male, age 53, unknown 108.1
2223 Female, age 72, unknown 100.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 64.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.3
Samples: 183

Max nTPM: 157.8
Min nTPM: 17.1
Std nTPM: 28.4
Median nTPM: 58.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 157.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 155.5
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 147.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 138.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 134.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 129.3
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 127.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 126.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 126.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 119.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 119.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 109.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 109.5
FF:10158-103A5 76 years, female 109.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 138.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 138.0
Samples: 4

Max nTPM: 198.9
Min nTPM: 59.1
Sample A Female 191.0
Sample B Female 102.8
Sample C Male 198.9
Sample D Male 59.1
Midbrain
nTPM: 118.6
Samples: 4

Max nTPM: 146.9
Min nTPM: 85.0
Sample A Female 85.0
Sample B Female 106.1
Sample C Male 146.9
Sample D Male 136.5
Periaqueductal gray
nTPM: 108.0
Samples: 3

Max nTPM: 147.9
Min nTPM: 83.1
Sample B Female 83.1
Sample C Male 147.9
Sample D Male 93.1
Superior colliculi
nTPM: 116.0
Samples: 4

Max nTPM: 128.3
Min nTPM: 99.4
Sample A Female 126.7
Sample B Female 99.4
Sample C Male 128.3
Sample D Male 109.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 364.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 364.7
Samples: 4

Max nTPM: 370.4
Min nTPM: 357.2
Sample A Male 363.7
Sample B Male 367.5
Sample C Female 357.2
Sample D Female 370.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 20.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.7
69015619 Antisense, RP_050315_01_D02, Mouse strain C57BL/6J (56 days, male) 20.7

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