A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
77.6
nTPM
Monaco:
98.6
nTPM
Schmiedel:
58.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
77.6
HPA sample
nTPM
Memory B-cell nTPM: 77.7
Samples: 6
Max nTPM: 123.0
Min nTPM: 0.8
P10809_1017
65.1
P10809_1025
78.2
P10809_1044
0.8
P10809_1063
112.5
P10809_1092
86.3
P10809_1105
123.0
Naive B-cell nTPM: 73.7
Samples: 6
Max nTPM: 116.5
Min nTPM: 2.8
P10809_1011
60.9
P10809_1029
80.0
P10809_1048
2.8
P10809_1067
101.5
P10809_1091
80.2
P10809_1104
116.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
98.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 80.9
Samples: 4
Max nTPM: 115.2
Min nTPM: 35.5
RHH5310_R3677
115.2
RHH5218_R3590
80.2
RHH5247_R3619
92.8
RHH5276_R3648
35.5
Naive B-cell nTPM: 76.4
Samples: 4
Max nTPM: 150.6
Min nTPM: 23.0
RHH5308_R3675
70.7
RHH5216_R3588
150.6
RHH5245_R3617
23.0
RHH5274_R3646
61.1
Non-switched memory B-cell nTPM: 74.5
Samples: 4
Max nTPM: 95.5
Min nTPM: 40.2
RHH5309_R3676
91.1
RHH5217_R3589
71.2
RHH5246_R3618
95.5
RHH5275_R3647
40.2
Plasmablast nTPM: 98.6
Samples: 4
Max nTPM: 134.9
Min nTPM: 52.2
RHH5312_R3679
112.2
RHH5220_R3592
134.9
RHH5249_R3621
95.1
RHH5278_R3650
52.2
Switched memory B-cell nTPM: 81.2
Samples: 4
Max nTPM: 125.5
Min nTPM: 52.8
RHH5311_R3678
125.5
RHH5219_R3591
85.8
RHH5248_R3620
60.7
RHH5277_R3649
52.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.2
Schmiedel sample id
TPM
Naive B-cell TPM: 58.2
Samples: 91
Max TPM: 90.6
Min TPM: 12.9
B_CELL_NAIVE_1
90.6
B_CELL_NAIVE_2
89.5
B_CELL_NAIVE_3
88.5
B_CELL_NAIVE_4
84.7
B_CELL_NAIVE_5
84.4
B_CELL_NAIVE_6
84.1
B_CELL_NAIVE_7
83.3
B_CELL_NAIVE_8
81.9
B_CELL_NAIVE_9
80.5
B_CELL_NAIVE_10
80.4
B_CELL_NAIVE_11
79.8
B_CELL_NAIVE_12
79.6
B_CELL_NAIVE_13
79.0
B_CELL_NAIVE_14
78.4
B_CELL_NAIVE_15
78.1
B_CELL_NAIVE_16
77.5
B_CELL_NAIVE_17
76.8
B_CELL_NAIVE_18
76.8
B_CELL_NAIVE_19
76.7
B_CELL_NAIVE_20
76.6
B_CELL_NAIVE_21
76.6
B_CELL_NAIVE_22
76.2
B_CELL_NAIVE_23
75.3
B_CELL_NAIVE_24
74.5
B_CELL_NAIVE_25
73.7
B_CELL_NAIVE_26
73.6
B_CELL_NAIVE_27
73.5
B_CELL_NAIVE_28
73.3
B_CELL_NAIVE_29
71.4
B_CELL_NAIVE_30
70.9
B_CELL_NAIVE_31
70.8
B_CELL_NAIVE_32
70.3
B_CELL_NAIVE_33
69.5
B_CELL_NAIVE_34
69.3
B_CELL_NAIVE_35
66.5
B_CELL_NAIVE_36
66.1
B_CELL_NAIVE_37
65.6
B_CELL_NAIVE_38
64.8
B_CELL_NAIVE_39
64.5
B_CELL_NAIVE_40
64.0
B_CELL_NAIVE_41
63.9
B_CELL_NAIVE_42
62.6
B_CELL_NAIVE_43
62.4
B_CELL_NAIVE_44
61.8
B_CELL_NAIVE_45
61.6
B_CELL_NAIVE_46
61.4
B_CELL_NAIVE_47
61.3
B_CELL_NAIVE_48
60.7
B_CELL_NAIVE_49
60.7
B_CELL_NAIVE_50
58.5
B_CELL_NAIVE_51
58.5
B_CELL_NAIVE_52
58.5
B_CELL_NAIVE_53
57.8
B_CELL_NAIVE_54
57.6
B_CELL_NAIVE_55
57.4
B_CELL_NAIVE_56
55.7
B_CELL_NAIVE_57
55.3
B_CELL_NAIVE_58
54.8
B_CELL_NAIVE_59
53.8
B_CELL_NAIVE_60
51.6
B_CELL_NAIVE_61
51.6
B_CELL_NAIVE_62
51.3
B_CELL_NAIVE_63
50.7
B_CELL_NAIVE_64
50.6
B_CELL_NAIVE_65
48.4
B_CELL_NAIVE_66
48.2
B_CELL_NAIVE_67
46.6
B_CELL_NAIVE_68
46.5
B_CELL_NAIVE_69
45.3
B_CELL_NAIVE_70
45.3
B_CELL_NAIVE_71
44.4
B_CELL_NAIVE_72
44.3
B_CELL_NAIVE_73
42.0
B_CELL_NAIVE_74
37.8
B_CELL_NAIVE_75
36.7
B_CELL_NAIVE_76
35.9
B_CELL_NAIVE_77
35.1
B_CELL_NAIVE_78
33.8
B_CELL_NAIVE_79
32.8
B_CELL_NAIVE_80
32.0
B_CELL_NAIVE_81
28.5
B_CELL_NAIVE_82
26.1
B_CELL_NAIVE_83
26.0
B_CELL_NAIVE_84
24.7
B_CELL_NAIVE_85
22.6
B_CELL_NAIVE_86
19.0
B_CELL_NAIVE_87
18.8
B_CELL_NAIVE_88
17.0
B_CELL_NAIVE_89
15.4
B_CELL_NAIVE_90
14.9
B_CELL_NAIVE_91
12.9
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