A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
79.3
nTPM
Monaco:
71.7
nTPM
Schmiedel:
82.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
79.3
HPA sample
nTPM
NK-cell nTPM: 79.3
Samples: 6
Max nTPM: 97.2
Min nTPM: 34.9
P10809_1013
34.9
P10809_1033
85.4
P10809_1052
97.2
P10809_1071
78.3
P10809_1093
90.8
P10809_1103
89.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
71.7
Monaco sample
nTPM
NK-cell nTPM: 71.7
Samples: 4
Max nTPM: 113.1
Min nTPM: 40.8
RHH5316_R3683
80.2
RHH5224_R3596
113.1
RHH5253_R3625
40.8
RHH5282_R3654
52.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
82.7
Schmiedel sample id
TPM
NK-cell TPM: 82.7
Samples: 90
Max TPM: 138.7
Min TPM: 26.7
NK_1
138.7
NK_2
133.3
NK_3
132.2
NK_4
129.6
NK_5
127.2
NK_6
125.7
NK_7
125.3
NK_8
122.4
NK_9
119.7
NK_10
119.5
NK_11
119.3
NK_12
117.8
NK_13
117.0
NK_14
115.4
NK_15
115.1
NK_16
113.2
NK_17
111.9
NK_18
111.3
NK_19
110.2
NK_20
110.0
NK_21
109.5
NK_22
108.5
NK_23
108.2
NK_24
104.9
NK_25
104.0
NK_26
103.5
NK_27
103.3
NK_28
101.0
NK_29
98.7
NK_30
98.3
NK_31
97.5
NK_32
96.1
NK_33
95.6
NK_34
94.8
NK_35
91.3
NK_36
90.2
NK_37
90.1
NK_38
89.7
NK_39
89.4
NK_40
88.5
NK_41
87.9
NK_42
87.1
NK_43
86.8
NK_44
85.9
NK_45
83.8
NK_46
83.1
NK_47
82.3
NK_48
80.6
NK_49
79.4
NK_50
78.1
NK_51
76.4
NK_52
75.9
NK_53
75.4
NK_54
73.5
NK_55
72.9
NK_56
71.4
NK_57
70.9
NK_58
70.3
NK_59
70.3
NK_60
69.2
NK_61
67.0
NK_62
66.0
NK_63
63.6
NK_64
63.6
NK_65
63.4
NK_66
62.8
NK_67
62.6
NK_68
61.9
NK_69
61.1
NK_70
60.5
NK_71
54.6
NK_72
54.4
NK_73
53.1
NK_74
52.0
NK_75
51.6
NK_76
51.1
NK_77
49.6
NK_78
48.7
NK_79
46.1
NK_80
44.1
NK_81
43.9
NK_82
41.9
NK_83
41.8
NK_84
41.6
NK_85
41.0
NK_86
34.7
NK_87
34.7
NK_88
30.3
NK_89
27.9
NK_90
26.7
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