A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
105.6
nTPM
Monaco:
83.4
nTPM
Schmiedel:
64.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
105.6
HPA sample
nTPM
Classical monocyte nTPM: 76.3
Samples: 6
Max nTPM: 104.8
Min nTPM: 49.8
P10809_1003
57.7
P10809_1020
104.8
P10809_1039
49.8
P10809_1058
65.6
P10809_1080
81.4
P10809_1107
98.3
Intermediate monocyte nTPM: 102.2
Samples: 6
Max nTPM: 125.9
Min nTPM: 79.7
P10809_1004
90.6
P10809_1023
115.6
P10809_1042
125.9
P10809_1061
120.1
P10809_1081
79.7
P10809_1108
81.4
Non-classical monocyte nTPM: 105.6
Samples: 5
Max nTPM: 130.1
Min nTPM: 83.9
P10809_1005
83.9
P10809_1053
123.5
P10809_1072
130.1
P10809_1082
86.0
P10809_1109
104.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
83.4
Monaco sample
nTPM
Classical monocyte nTPM: 83.4
Samples: 4
Max nTPM: 119.1
Min nTPM: 55.8
RHH5313_R3680
92.9
RHH5221_R3593
119.1
RHH5250_R3622
65.9
RHH5279_R3651
55.8
Intermediate monocyte nTPM: 69.4
Samples: 4
Max nTPM: 77.1
Min nTPM: 54.1
RHH5314_R3681
73.6
RHH5222_R3594
72.7
RHH5251_R3623
54.1
RHH5280_R3652
77.1
Non-classical monocyte nTPM: 78.5
Samples: 4
Max nTPM: 101.2
Min nTPM: 55.4
RHH5315_R3682
101.2
RHH5223_R3595
98.9
RHH5252_R3624
58.6
RHH5281_R3653
55.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
64.7
Schmiedel sample id
TPM
Classical monocyte TPM: 64.7
Samples: 91
Max TPM: 95.3
Min TPM: 35.3
MONOCYTES_1
95.3
MONOCYTES_2
93.9
MONOCYTES_3
91.6
MONOCYTES_4
90.4
MONOCYTES_5
90.4
MONOCYTES_6
90.0
MONOCYTES_7
86.8
MONOCYTES_8
86.4
MONOCYTES_9
86.3
MONOCYTES_10
85.7
MONOCYTES_11
83.0
MONOCYTES_12
82.0
MONOCYTES_13
80.9
MONOCYTES_14
80.3
MONOCYTES_15
80.1
MONOCYTES_16
79.9
MONOCYTES_17
79.1
MONOCYTES_18
78.8
MONOCYTES_19
78.1
MONOCYTES_20
77.1
MONOCYTES_21
76.4
MONOCYTES_22
76.1
MONOCYTES_23
76.1
MONOCYTES_24
75.9
MONOCYTES_25
75.8
MONOCYTES_26
75.4
MONOCYTES_27
74.8
MONOCYTES_28
74.5
MONOCYTES_29
73.7
MONOCYTES_30
72.8
MONOCYTES_31
72.7
MONOCYTES_32
72.2
MONOCYTES_33
71.6
MONOCYTES_34
70.9
MONOCYTES_35
70.2
MONOCYTES_36
69.8
MONOCYTES_37
69.6
MONOCYTES_38
69.6
MONOCYTES_39
69.0
MONOCYTES_40
68.9
MONOCYTES_41
68.9
MONOCYTES_42
67.5
MONOCYTES_43
67.3
MONOCYTES_44
67.3
MONOCYTES_45
67.1
MONOCYTES_46
66.5
MONOCYTES_47
65.4
MONOCYTES_48
65.1
MONOCYTES_49
63.1
MONOCYTES_50
62.3
MONOCYTES_51
61.8
MONOCYTES_52
61.2
MONOCYTES_53
59.9
MONOCYTES_54
59.5
MONOCYTES_55
58.9
MONOCYTES_56
58.6
MONOCYTES_57
57.9
MONOCYTES_58
57.6
MONOCYTES_59
57.2
MONOCYTES_60
56.9
MONOCYTES_61
56.5
MONOCYTES_62
56.4
MONOCYTES_63
56.2
MONOCYTES_64
56.0
MONOCYTES_65
55.6
MONOCYTES_66
54.8
MONOCYTES_67
54.7
MONOCYTES_68
53.4
MONOCYTES_69
53.2
MONOCYTES_70
52.3
MONOCYTES_71
51.6
MONOCYTES_72
51.2
MONOCYTES_73
50.5
MONOCYTES_74
50.3
MONOCYTES_75
49.7
MONOCYTES_76
49.5
MONOCYTES_77
49.0
MONOCYTES_78
48.4
MONOCYTES_79
48.0
MONOCYTES_80
48.0
MONOCYTES_81
45.0
MONOCYTES_82
44.8
MONOCYTES_83
43.4
MONOCYTES_84
42.2
MONOCYTES_85
42.1
MONOCYTES_86
39.2
MONOCYTES_87
38.9
MONOCYTES_88
38.1
MONOCYTES_89
36.5
MONOCYTES_90
36.4
MONOCYTES_91
35.3
Show allShow less
Non-classical monocyte TPM: 58.1
Samples: 90
Max TPM: 94.6
Min TPM: 18.4
M2_1
94.6
M2_2
92.1
M2_3
91.7
M2_4
90.3
M2_5
90.2
M2_6
89.3
M2_7
86.5
M2_8
86.4
M2_9
82.6
M2_10
79.3
M2_11
78.6
M2_12
78.2
M2_13
75.7
M2_14
74.7
M2_15
73.8
M2_16
73.0
M2_17
72.4
M2_18
72.4
M2_19
72.2
M2_20
72.1
M2_21
71.6
M2_22
71.1
M2_23
71.0
M2_24
70.7
M2_25
70.3
M2_26
69.2
M2_27
69.0
M2_28
68.8
M2_29
68.1
M2_30
68.0
M2_31
67.4
M2_32
67.0
M2_33
66.9
M2_34
66.7
M2_35
66.6
M2_36
66.3
M2_37
66.0
M2_38
63.9
M2_39
63.6
M2_40
61.4
M2_41
61.3
M2_42
60.7
M2_43
59.9
M2_44
58.9
M2_45
58.5
M2_46
58.4
M2_47
58.3
M2_48
57.7
M2_49
57.6
M2_50
56.5
M2_51
56.3
M2_52
55.9
M2_53
55.1
M2_54
54.6
M2_55
54.0
M2_56
53.9
M2_57
53.7
M2_58
53.5
M2_59
53.4
M2_60
53.1
M2_61
51.2
M2_62
50.4
M2_63
50.3
M2_64
49.7
M2_65
49.5
M2_66
46.1
M2_67
44.9
M2_68
43.5
M2_69
43.2
M2_70
42.2
M2_71
41.6
M2_72
41.2
M2_73
40.0
M2_74
39.3
M2_75
39.2
M2_76
37.5
M2_77
35.8
M2_78
35.5
M2_79
35.0
M2_80
33.6
M2_81
32.7
M2_82
32.6
M2_83
32.0
M2_84
30.4
M2_85
30.3
M2_86
27.6
M2_87
26.1
M2_88
21.1
M2_89
20.8
M2_90
18.4
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
