A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.7
nTPM
Monaco:
15.2
nTPM
Schmiedel:
67.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.7
HPA sample
nTPM
Memory B-cell nTPM: 4.7
Samples: 6
Max nTPM: 16.3
Min nTPM: 1.6
P10809_1017
3.6
P10809_1025
1.6
P10809_1044
16.3
P10809_1063
2.9
P10809_1092
1.9
P10809_1105
2.0
Naive B-cell nTPM: 1.9
Samples: 6
Max nTPM: 4.6
Min nTPM: 0.0
P10809_1011
1.3
P10809_1029
2.7
P10809_1048
0.0
P10809_1067
4.6
P10809_1091
1.6
P10809_1104
1.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 10.0
Samples: 4
Max nTPM: 14.3
Min nTPM: 4.1
RHH5310_R3677
4.1
RHH5218_R3590
12.9
RHH5247_R3619
8.6
RHH5276_R3648
14.3
Naive B-cell nTPM: 11.5
Samples: 4
Max nTPM: 14.6
Min nTPM: 9.6
RHH5308_R3675
14.6
RHH5216_R3588
11.1
RHH5245_R3617
9.6
RHH5274_R3646
10.7
Non-switched memory B-cell nTPM: 15.2
Samples: 4
Max nTPM: 20.8
Min nTPM: 3.2
RHH5309_R3676
16.8
RHH5217_R3589
20.8
RHH5246_R3618
3.2
RHH5275_R3647
19.8
Plasmablast nTPM: 6.1
Samples: 4
Max nTPM: 9.4
Min nTPM: 4.2
RHH5312_R3679
6.5
RHH5220_R3592
4.2
RHH5249_R3621
9.4
RHH5278_R3650
4.4
Switched memory B-cell nTPM: 13.8
Samples: 4
Max nTPM: 16.7
Min nTPM: 8.4
RHH5311_R3678
8.4
RHH5219_R3591
14.9
RHH5248_R3620
16.7
RHH5277_R3649
15.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
67.3
Schmiedel sample id
TPM
Naive B-cell TPM: 67.3
Samples: 91
Max TPM: 80.9
Min TPM: 57.4
B_CELL_NAIVE_1
80.9
B_CELL_NAIVE_2
80.5
B_CELL_NAIVE_3
79.1
B_CELL_NAIVE_4
76.7
B_CELL_NAIVE_5
76.4
B_CELL_NAIVE_6
75.2
B_CELL_NAIVE_7
74.4
B_CELL_NAIVE_8
74.3
B_CELL_NAIVE_9
73.5
B_CELL_NAIVE_10
73.2
B_CELL_NAIVE_11
72.8
B_CELL_NAIVE_12
72.5
B_CELL_NAIVE_13
71.8
B_CELL_NAIVE_14
71.5
B_CELL_NAIVE_15
71.5
B_CELL_NAIVE_16
70.9
B_CELL_NAIVE_17
70.7
B_CELL_NAIVE_18
70.7
B_CELL_NAIVE_19
70.7
B_CELL_NAIVE_20
70.5
B_CELL_NAIVE_21
69.8
B_CELL_NAIVE_22
69.5
B_CELL_NAIVE_23
69.3
B_CELL_NAIVE_24
69.2
B_CELL_NAIVE_25
69.2
B_CELL_NAIVE_26
69.2
B_CELL_NAIVE_27
69.1
B_CELL_NAIVE_28
69.0
B_CELL_NAIVE_29
68.8
B_CELL_NAIVE_30
68.7
B_CELL_NAIVE_31
68.6
B_CELL_NAIVE_32
68.4
B_CELL_NAIVE_33
68.3
B_CELL_NAIVE_34
68.2
B_CELL_NAIVE_35
68.1
B_CELL_NAIVE_36
68.1
B_CELL_NAIVE_37
68.1
B_CELL_NAIVE_38
68.1
B_CELL_NAIVE_39
68.0
B_CELL_NAIVE_40
68.0
B_CELL_NAIVE_41
67.2
B_CELL_NAIVE_42
67.2
B_CELL_NAIVE_43
67.1
B_CELL_NAIVE_44
67.0
B_CELL_NAIVE_45
66.9
B_CELL_NAIVE_46
66.8
B_CELL_NAIVE_47
66.7
B_CELL_NAIVE_48
66.6
B_CELL_NAIVE_49
66.6
B_CELL_NAIVE_50
66.5
B_CELL_NAIVE_51
66.5
B_CELL_NAIVE_52
66.4
B_CELL_NAIVE_53
66.3
B_CELL_NAIVE_54
66.3
B_CELL_NAIVE_55
66.0
B_CELL_NAIVE_56
66.0
B_CELL_NAIVE_57
65.9
B_CELL_NAIVE_58
65.9
B_CELL_NAIVE_59
65.6
B_CELL_NAIVE_60
65.4
B_CELL_NAIVE_61
65.4
B_CELL_NAIVE_62
65.4
B_CELL_NAIVE_63
65.2
B_CELL_NAIVE_64
65.2
B_CELL_NAIVE_65
65.0
B_CELL_NAIVE_66
64.9
B_CELL_NAIVE_67
64.7
B_CELL_NAIVE_68
64.7
B_CELL_NAIVE_69
64.5
B_CELL_NAIVE_70
64.5
B_CELL_NAIVE_71
64.1
B_CELL_NAIVE_72
63.9
B_CELL_NAIVE_73
63.9
B_CELL_NAIVE_74
63.5
B_CELL_NAIVE_75
63.4
B_CELL_NAIVE_76
63.3
B_CELL_NAIVE_77
62.9
B_CELL_NAIVE_78
62.9
B_CELL_NAIVE_79
62.8
B_CELL_NAIVE_80
62.4
B_CELL_NAIVE_81
62.4
B_CELL_NAIVE_82
61.8
B_CELL_NAIVE_83
61.2
B_CELL_NAIVE_84
60.5
B_CELL_NAIVE_85
59.8
B_CELL_NAIVE_86
59.8
B_CELL_NAIVE_87
59.2
B_CELL_NAIVE_88
59.0
B_CELL_NAIVE_89
58.8
B_CELL_NAIVE_90
58.3
B_CELL_NAIVE_91
57.4
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The Human Protein Atlas project is funded
