A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.2
nTPM
Monaco:
13.1
nTPM
Schmiedel:
58.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.2
HPA sample
nTPM
NK-cell nTPM: 3.2
Samples: 6
Max nTPM: 8.0
Min nTPM: 1.2
P10809_1013
1.2
P10809_1033
1.6
P10809_1052
2.4
P10809_1071
4.2
P10809_1093
8.0
P10809_1103
1.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.1
Monaco sample
nTPM
NK-cell nTPM: 13.1
Samples: 4
Max nTPM: 14.7
Min nTPM: 10.7
RHH5316_R3683
12.7
RHH5224_R3596
14.3
RHH5253_R3625
10.7
RHH5282_R3654
14.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.5
Schmiedel sample id
TPM
NK-cell TPM: 58.5
Samples: 90
Max TPM: 77.3
Min TPM: 40.2
NK_1
77.3
NK_2
71.8
NK_3
69.0
NK_4
66.5
NK_5
65.6
NK_6
65.5
NK_7
65.2
NK_8
64.8
NK_9
64.6
NK_10
64.5
NK_11
64.4
NK_12
64.3
NK_13
64.0
NK_14
63.0
NK_15
62.9
NK_16
62.9
NK_17
62.7
NK_18
62.3
NK_19
62.3
NK_20
61.8
NK_21
61.8
NK_22
61.6
NK_23
61.4
NK_24
61.4
NK_25
61.2
NK_26
61.1
NK_27
61.0
NK_28
60.8
NK_29
60.7
NK_30
60.5
NK_31
60.5
NK_32
60.5
NK_33
60.4
NK_34
60.2
NK_35
59.9
NK_36
59.9
NK_37
59.8
NK_38
59.4
NK_39
59.3
NK_40
59.3
NK_41
59.1
NK_42
58.9
NK_43
58.9
NK_44
58.7
NK_45
58.6
NK_46
58.4
NK_47
58.2
NK_48
58.1
NK_49
58.1
NK_50
58.0
NK_51
57.9
NK_52
57.9
NK_53
57.9
NK_54
57.9
NK_55
57.9
NK_56
57.5
NK_57
57.5
NK_58
57.3
NK_59
57.2
NK_60
57.1
NK_61
57.0
NK_62
56.9
NK_63
56.9
NK_64
56.9
NK_65
56.7
NK_66
56.6
NK_67
55.6
NK_68
55.5
NK_69
54.7
NK_70
54.6
NK_71
54.4
NK_72
54.3
NK_73
54.3
NK_74
54.1
NK_75
53.9
NK_76
53.0
NK_77
52.6
NK_78
52.5
NK_79
52.4
NK_80
52.2
NK_81
51.8
NK_82
51.3
NK_83
50.6
NK_84
50.5
NK_85
50.0
NK_86
50.0
NK_87
49.9
NK_88
49.8
NK_89
47.7
NK_90
40.2
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