A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.8
nTPM
Monaco:
7.3
nTPM
Schmiedel:
48.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.8
HPA sample
nTPM
Classical monocyte nTPM: 2.2
Samples: 6
Max nTPM: 4.1
Min nTPM: 0.7
P10809_1003
0.7
P10809_1020
2.0
P10809_1039
2.0
P10809_1058
3.3
P10809_1080
4.1
P10809_1107
1.2
Intermediate monocyte nTPM: 2.1
Samples: 6
Max nTPM: 6.7
Min nTPM: 0.0
P10809_1004
0.4
P10809_1023
0.0
P10809_1042
0.0
P10809_1061
6.7
P10809_1081
3.0
P10809_1108
2.5
Non-classical monocyte nTPM: 5.8
Samples: 5
Max nTPM: 23.7
Min nTPM: 0.3
P10809_1005
0.8
P10809_1053
0.3
P10809_1072
23.7
P10809_1082
3.3
P10809_1109
0.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.3
Monaco sample
nTPM
Classical monocyte nTPM: 7.3
Samples: 4
Max nTPM: 8.3
Min nTPM: 6.5
RHH5313_R3680
7.6
RHH5221_R3593
6.5
RHH5250_R3622
8.3
RHH5279_R3651
6.9
Intermediate monocyte nTPM: 6.2
Samples: 4
Max nTPM: 8.6
Min nTPM: 4.8
RHH5314_R3681
4.8
RHH5222_R3594
8.6
RHH5251_R3623
5.1
RHH5280_R3652
6.3
Non-classical monocyte nTPM: 5.3
Samples: 4
Max nTPM: 7.7
Min nTPM: 3.2
RHH5315_R3682
6.5
RHH5223_R3595
3.7
RHH5252_R3624
7.7
RHH5281_R3653
3.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
48.3
Schmiedel sample id
TPM
Classical monocyte TPM: 38.8
Samples: 91
Max TPM: 49.0
Min TPM: 33.1
MONOCYTES_1
49.0
MONOCYTES_2
46.3
MONOCYTES_3
45.2
MONOCYTES_4
44.8
MONOCYTES_5
44.7
MONOCYTES_6
44.0
MONOCYTES_7
43.9
MONOCYTES_8
43.5
MONOCYTES_9
43.3
MONOCYTES_10
42.6
MONOCYTES_11
42.6
MONOCYTES_12
42.3
MONOCYTES_13
42.3
MONOCYTES_14
42.1
MONOCYTES_15
41.9
MONOCYTES_16
41.9
MONOCYTES_17
41.7
MONOCYTES_18
41.6
MONOCYTES_19
41.6
MONOCYTES_20
41.6
MONOCYTES_21
41.1
MONOCYTES_22
41.1
MONOCYTES_23
41.0
MONOCYTES_24
40.9
MONOCYTES_25
40.7
MONOCYTES_26
40.7
MONOCYTES_27
40.5
MONOCYTES_28
40.2
MONOCYTES_29
40.2
MONOCYTES_30
40.1
MONOCYTES_31
40.1
MONOCYTES_32
40.0
MONOCYTES_33
40.0
MONOCYTES_34
39.9
MONOCYTES_35
39.8
MONOCYTES_36
39.7
MONOCYTES_37
39.5
MONOCYTES_38
39.4
MONOCYTES_39
39.2
MONOCYTES_40
39.1
MONOCYTES_41
39.0
MONOCYTES_42
38.9
MONOCYTES_43
38.9
MONOCYTES_44
38.6
MONOCYTES_45
38.5
MONOCYTES_46
38.5
MONOCYTES_47
38.5
MONOCYTES_48
38.4
MONOCYTES_49
38.3
MONOCYTES_50
38.2
MONOCYTES_51
38.0
MONOCYTES_52
37.8
MONOCYTES_53
37.6
MONOCYTES_54
37.5
MONOCYTES_55
37.5
MONOCYTES_56
37.5
MONOCYTES_57
37.5
MONOCYTES_58
37.4
MONOCYTES_59
37.3
MONOCYTES_60
37.3
MONOCYTES_61
37.2
MONOCYTES_62
37.0
MONOCYTES_63
37.0
MONOCYTES_64
36.9
MONOCYTES_65
36.8
MONOCYTES_66
36.8
MONOCYTES_67
36.7
MONOCYTES_68
36.6
MONOCYTES_69
36.6
MONOCYTES_70
36.6
MONOCYTES_71
36.6
MONOCYTES_72
36.4
MONOCYTES_73
36.3
MONOCYTES_74
36.3
MONOCYTES_75
36.1
MONOCYTES_76
36.1
MONOCYTES_77
36.1
MONOCYTES_78
35.1
MONOCYTES_79
34.8
MONOCYTES_80
34.6
MONOCYTES_81
34.6
MONOCYTES_82
34.4
MONOCYTES_83
34.3
MONOCYTES_84
34.3
MONOCYTES_85
33.9
MONOCYTES_86
33.7
MONOCYTES_87
33.7
MONOCYTES_88
33.7
MONOCYTES_89
33.3
MONOCYTES_90
33.3
MONOCYTES_91
33.1
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Non-classical monocyte TPM: 48.3
Samples: 90
Max TPM: 59.9
Min TPM: 40.7
M2_1
59.9
M2_2
55.2
M2_3
54.3
M2_4
54.0
M2_5
53.4
M2_6
53.0
M2_7
52.9
M2_8
52.6
M2_9
52.3
M2_10
52.2
M2_11
52.1
M2_12
52.0
M2_13
52.0
M2_14
51.7
M2_15
51.3
M2_16
51.0
M2_17
51.0
M2_18
50.9
M2_19
50.8
M2_20
50.5
M2_21
50.5
M2_22
50.4
M2_23
50.4
M2_24
50.2
M2_25
50.2
M2_26
50.1
M2_27
50.0
M2_28
50.0
M2_29
49.9
M2_30
49.8
M2_31
49.8
M2_32
49.7
M2_33
49.6
M2_34
49.5
M2_35
49.4
M2_36
49.4
M2_37
49.2
M2_38
49.2
M2_39
49.0
M2_40
49.0
M2_41
48.9
M2_42
48.9
M2_43
48.8
M2_44
48.8
M2_45
48.7
M2_46
48.6
M2_47
48.5
M2_48
48.3
M2_49
48.3
M2_50
48.0
M2_51
47.8
M2_52
47.7
M2_53
47.6
M2_54
47.5
M2_55
47.5
M2_56
47.4
M2_57
47.3
M2_58
47.3
M2_59
47.3
M2_60
46.9
M2_61
46.6
M2_62
46.6
M2_63
46.5
M2_64
46.5
M2_65
46.4
M2_66
46.3
M2_67
46.1
M2_68
45.7
M2_69
45.5
M2_70
45.5
M2_71
45.4
M2_72
45.4
M2_73
45.4
M2_74
45.3
M2_75
45.3
M2_76
45.2
M2_77
45.0
M2_78
44.7
M2_79
44.7
M2_80
44.3
M2_81
44.1
M2_82
44.0
M2_83
43.9
M2_84
43.5
M2_85
43.2
M2_86
43.1
M2_87
43.0
M2_88
42.0
M2_89
41.1
M2_90
40.7
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