A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
55.3
nTPM
Monaco:
127.8
nTPM
Schmiedel:
61.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.3
HPA sample
nTPM
Memory B-cell nTPM: 50.5
Samples: 6
Max nTPM: 64.1
Min nTPM: 22.2
P10809_1017
31.4
P10809_1025
61.9
P10809_1044
22.2
P10809_1063
64.1
P10809_1092
64.1
P10809_1105
59.1
Naive B-cell nTPM: 55.3
Samples: 6
Max nTPM: 71.8
Min nTPM: 43.5
P10809_1011
44.6
P10809_1029
71.8
P10809_1048
62.1
P10809_1067
43.5
P10809_1091
55.5
P10809_1104
54.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
127.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 121.2
Samples: 4
Max nTPM: 139.4
Min nTPM: 89.4
RHH5310_R3677
89.4
RHH5218_R3590
139.4
RHH5247_R3619
116.6
RHH5276_R3648
139.3
Naive B-cell nTPM: 121.5
Samples: 4
Max nTPM: 129.5
Min nTPM: 110.2
RHH5308_R3675
118.7
RHH5216_R3588
129.5
RHH5245_R3617
110.2
RHH5274_R3646
127.6
Non-switched memory B-cell nTPM: 127.8
Samples: 4
Max nTPM: 151.6
Min nTPM: 101.8
RHH5309_R3676
145.2
RHH5217_R3589
101.8
RHH5246_R3618
112.7
RHH5275_R3647
151.6
Plasmablast nTPM: 65.0
Samples: 4
Max nTPM: 72.9
Min nTPM: 60.4
RHH5312_R3679
60.4
RHH5220_R3592
65.6
RHH5249_R3621
72.9
RHH5278_R3650
60.9
Switched memory B-cell nTPM: 122.1
Samples: 4
Max nTPM: 127.7
Min nTPM: 113.7
RHH5311_R3678
113.7
RHH5219_R3591
127.7
RHH5248_R3620
119.8
RHH5277_R3649
127.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
61.4
Schmiedel sample id
TPM
Naive B-cell TPM: 61.4
Samples: 91
Max TPM: 78.6
Min TPM: 42.6
B_CELL_NAIVE_1
78.6
B_CELL_NAIVE_2
74.9
B_CELL_NAIVE_3
73.7
B_CELL_NAIVE_4
73.2
B_CELL_NAIVE_5
73.1
B_CELL_NAIVE_6
72.7
B_CELL_NAIVE_7
71.5
B_CELL_NAIVE_8
70.9
B_CELL_NAIVE_9
70.7
B_CELL_NAIVE_10
69.5
B_CELL_NAIVE_11
69.1
B_CELL_NAIVE_12
69.0
B_CELL_NAIVE_13
68.8
B_CELL_NAIVE_14
68.4
B_CELL_NAIVE_15
68.3
B_CELL_NAIVE_16
67.7
B_CELL_NAIVE_17
67.6
B_CELL_NAIVE_18
67.6
B_CELL_NAIVE_19
67.3
B_CELL_NAIVE_20
67.3
B_CELL_NAIVE_21
66.5
B_CELL_NAIVE_22
66.3
B_CELL_NAIVE_23
66.2
B_CELL_NAIVE_24
65.7
B_CELL_NAIVE_25
65.5
B_CELL_NAIVE_26
65.2
B_CELL_NAIVE_27
65.2
B_CELL_NAIVE_28
64.5
B_CELL_NAIVE_29
64.1
B_CELL_NAIVE_30
64.0
B_CELL_NAIVE_31
63.8
B_CELL_NAIVE_32
63.8
B_CELL_NAIVE_33
63.8
B_CELL_NAIVE_34
63.5
B_CELL_NAIVE_35
63.0
B_CELL_NAIVE_36
62.7
B_CELL_NAIVE_37
62.5
B_CELL_NAIVE_38
62.3
B_CELL_NAIVE_39
62.1
B_CELL_NAIVE_40
61.6
B_CELL_NAIVE_41
61.3
B_CELL_NAIVE_42
61.1
B_CELL_NAIVE_43
61.0
B_CELL_NAIVE_44
60.8
B_CELL_NAIVE_45
60.8
B_CELL_NAIVE_46
60.8
B_CELL_NAIVE_47
60.7
B_CELL_NAIVE_48
60.5
B_CELL_NAIVE_49
60.4
B_CELL_NAIVE_50
60.0
B_CELL_NAIVE_51
60.0
B_CELL_NAIVE_52
60.0
B_CELL_NAIVE_53
59.6
B_CELL_NAIVE_54
59.6
B_CELL_NAIVE_55
59.4
B_CELL_NAIVE_56
59.3
B_CELL_NAIVE_57
59.1
B_CELL_NAIVE_58
59.1
B_CELL_NAIVE_59
58.7
B_CELL_NAIVE_60
58.7
B_CELL_NAIVE_61
58.6
B_CELL_NAIVE_62
58.5
B_CELL_NAIVE_63
58.3
B_CELL_NAIVE_64
58.1
B_CELL_NAIVE_65
58.1
B_CELL_NAIVE_66
58.0
B_CELL_NAIVE_67
57.9
B_CELL_NAIVE_68
57.7
B_CELL_NAIVE_69
57.4
B_CELL_NAIVE_70
57.3
B_CELL_NAIVE_71
56.8
B_CELL_NAIVE_72
56.5
B_CELL_NAIVE_73
56.5
B_CELL_NAIVE_74
56.4
B_CELL_NAIVE_75
56.4
B_CELL_NAIVE_76
55.9
B_CELL_NAIVE_77
55.2
B_CELL_NAIVE_78
55.2
B_CELL_NAIVE_79
54.9
B_CELL_NAIVE_80
54.0
B_CELL_NAIVE_81
53.8
B_CELL_NAIVE_82
53.3
B_CELL_NAIVE_83
53.0
B_CELL_NAIVE_84
52.8
B_CELL_NAIVE_85
52.6
B_CELL_NAIVE_86
52.1
B_CELL_NAIVE_87
51.2
B_CELL_NAIVE_88
48.1
B_CELL_NAIVE_89
46.7
B_CELL_NAIVE_90
45.9
B_CELL_NAIVE_91
42.6
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
