A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
28.4
nTPM
Monaco:
109.0
nTPM
Schmiedel:
37.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.4
HPA sample
nTPM
Classical monocyte nTPM: 27.3
Samples: 6
Max nTPM: 35.2
Min nTPM: 20.1
P10809_1003
35.2
P10809_1020
32.3
P10809_1039
25.9
P10809_1058
20.1
P10809_1080
29.0
P10809_1107
21.2
Intermediate monocyte nTPM: 26.7
Samples: 6
Max nTPM: 38.6
Min nTPM: 19.7
P10809_1004
24.2
P10809_1023
28.9
P10809_1042
29.2
P10809_1061
38.6
P10809_1081
19.7
P10809_1108
19.8
Non-classical monocyte nTPM: 28.4
Samples: 5
Max nTPM: 35.4
Min nTPM: 20.1
P10809_1005
29.8
P10809_1053
30.1
P10809_1072
35.4
P10809_1082
20.1
P10809_1109
26.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
109.0
Monaco sample
nTPM
Classical monocyte nTPM: 109.0
Samples: 4
Max nTPM: 112.2
Min nTPM: 106.7
RHH5313_R3680
106.7
RHH5221_R3593
109.9
RHH5250_R3622
112.2
RHH5279_R3651
107.3
Intermediate monocyte nTPM: 88.5
Samples: 4
Max nTPM: 102.4
Min nTPM: 74.7
RHH5314_R3681
74.7
RHH5222_R3594
102.4
RHH5251_R3623
94.9
RHH5280_R3652
81.9
Non-classical monocyte nTPM: 79.5
Samples: 4
Max nTPM: 93.0
Min nTPM: 68.5
RHH5315_R3682
75.0
RHH5223_R3595
81.5
RHH5252_R3624
93.0
RHH5281_R3653
68.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.8
Schmiedel sample id
TPM
Classical monocyte TPM: 37.8
Samples: 91
Max TPM: 45.4
Min TPM: 27.0
MONOCYTES_1
45.4
MONOCYTES_2
45.1
MONOCYTES_3
44.0
MONOCYTES_4
43.9
MONOCYTES_5
43.4
MONOCYTES_6
43.3
MONOCYTES_7
43.3
MONOCYTES_8
43.0
MONOCYTES_9
42.9
MONOCYTES_10
42.3
MONOCYTES_11
42.2
MONOCYTES_12
42.0
MONOCYTES_13
41.8
MONOCYTES_14
41.6
MONOCYTES_15
41.1
MONOCYTES_16
41.1
MONOCYTES_17
41.0
MONOCYTES_18
41.0
MONOCYTES_19
40.9
MONOCYTES_20
40.9
MONOCYTES_21
40.8
MONOCYTES_22
40.8
MONOCYTES_23
40.7
MONOCYTES_24
40.7
MONOCYTES_25
40.3
MONOCYTES_26
40.3
MONOCYTES_27
40.3
MONOCYTES_28
40.0
MONOCYTES_29
40.0
MONOCYTES_30
39.9
MONOCYTES_31
39.9
MONOCYTES_32
39.8
MONOCYTES_33
39.7
MONOCYTES_34
39.6
MONOCYTES_35
39.5
MONOCYTES_36
39.3
MONOCYTES_37
39.1
MONOCYTES_38
39.1
MONOCYTES_39
38.8
MONOCYTES_40
38.8
MONOCYTES_41
38.6
MONOCYTES_42
38.4
MONOCYTES_43
38.3
MONOCYTES_44
38.0
MONOCYTES_45
37.9
MONOCYTES_46
37.7
MONOCYTES_47
37.6
MONOCYTES_48
37.6
MONOCYTES_49
37.4
MONOCYTES_50
37.4
MONOCYTES_51
37.4
MONOCYTES_52
37.2
MONOCYTES_53
37.1
MONOCYTES_54
37.0
MONOCYTES_55
37.0
MONOCYTES_56
37.0
MONOCYTES_57
36.9
MONOCYTES_58
36.6
MONOCYTES_59
36.4
MONOCYTES_60
36.4
MONOCYTES_61
36.3
MONOCYTES_62
36.3
MONOCYTES_63
36.3
MONOCYTES_64
36.2
MONOCYTES_65
36.1
MONOCYTES_66
36.0
MONOCYTES_67
35.9
MONOCYTES_68
35.4
MONOCYTES_69
35.2
MONOCYTES_70
35.0
MONOCYTES_71
34.9
MONOCYTES_72
34.7
MONOCYTES_73
34.7
MONOCYTES_74
34.7
MONOCYTES_75
34.7
MONOCYTES_76
34.6
MONOCYTES_77
34.2
MONOCYTES_78
34.2
MONOCYTES_79
33.9
MONOCYTES_80
33.8
MONOCYTES_81
33.8
MONOCYTES_82
33.5
MONOCYTES_83
32.2
MONOCYTES_84
32.1
MONOCYTES_85
32.1
MONOCYTES_86
31.7
MONOCYTES_87
31.7
MONOCYTES_88
30.5
MONOCYTES_89
30.1
MONOCYTES_90
29.9
MONOCYTES_91
27.0
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Non-classical monocyte TPM: 27.0
Samples: 90
Max TPM: 33.6
Min TPM: 20.6
M2_1
33.6
M2_2
32.3
M2_3
31.8
M2_4
31.8
M2_5
31.4
M2_6
31.3
M2_7
31.0
M2_8
30.8
M2_9
30.8
M2_10
30.5
M2_11
30.4
M2_12
30.3
M2_13
30.0
M2_14
29.9
M2_15
29.6
M2_16
29.4
M2_17
29.2
M2_18
29.2
M2_19
29.1
M2_20
29.1
M2_21
29.0
M2_22
29.0
M2_23
29.0
M2_24
28.9
M2_25
28.8
M2_26
28.8
M2_27
28.7
M2_28
28.7
M2_29
28.2
M2_30
28.0
M2_31
27.9
M2_32
27.8
M2_33
27.7
M2_34
27.6
M2_35
27.6
M2_36
27.5
M2_37
27.4
M2_38
27.3
M2_39
27.2
M2_40
27.2
M2_41
27.2
M2_42
27.1
M2_43
27.0
M2_44
27.0
M2_45
26.9
M2_46
26.8
M2_47
26.8
M2_48
26.7
M2_49
26.6
M2_50
26.4
M2_51
26.3
M2_52
26.3
M2_53
26.3
M2_54
26.2
M2_55
26.1
M2_56
26.0
M2_57
25.7
M2_58
25.7
M2_59
25.7
M2_60
25.6
M2_61
25.4
M2_62
25.4
M2_63
25.4
M2_64
25.4
M2_65
25.3
M2_66
25.2
M2_67
25.0
M2_68
25.0
M2_69
24.9
M2_70
24.8
M2_71
24.6
M2_72
24.6
M2_73
24.5
M2_74
24.5
M2_75
24.5
M2_76
24.4
M2_77
24.4
M2_78
24.2
M2_79
24.2
M2_80
24.1
M2_81
24.0
M2_82
24.0
M2_83
24.0
M2_84
23.8
M2_85
23.7
M2_86
23.5
M2_87
23.1
M2_88
22.4
M2_89
21.7
M2_90
20.6
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