A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
33.2
nTPM
Monaco:
65.9
nTPM
Schmiedel:
25.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.2
HPA sample
nTPM
NK-cell nTPM: 33.3
Samples: 6
Max nTPM: 56.9
Min nTPM: 13.0
P10809_1013
13.0
P10809_1033
46.2
P10809_1052
28.6
P10809_1071
23.2
P10809_1093
56.9
P10809_1103
31.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
65.9
Monaco sample
nTPM
NK-cell nTPM: 65.9
Samples: 4
Max nTPM: 77.7
Min nTPM: 59.5
RHH5316_R3683
77.7
RHH5224_R3596
61.3
RHH5253_R3625
59.5
RHH5282_R3654
65.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.4
Schmiedel sample id
TPM
NK-cell TPM: 25.4
Samples: 90
Max TPM: 32.7
Min TPM: 18.2
NK_1
32.7
NK_2
31.3
NK_3
30.9
NK_4
30.1
NK_5
29.5
NK_6
29.4
NK_7
29.2
NK_8
29.0
NK_9
28.8
NK_10
28.7
NK_11
28.1
NK_12
28.0
NK_13
28.0
NK_14
27.9
NK_15
27.8
NK_16
27.5
NK_17
27.5
NK_18
27.5
NK_19
27.4
NK_20
27.3
NK_21
27.3
NK_22
27.3
NK_23
27.2
NK_24
27.1
NK_25
27.0
NK_26
26.9
NK_27
26.8
NK_28
26.8
NK_29
26.7
NK_30
26.6
NK_31
26.6
NK_32
26.4
NK_33
26.3
NK_34
26.3
NK_35
26.1
NK_36
26.1
NK_37
26.1
NK_38
25.9
NK_39
25.9
NK_40
25.8
NK_41
25.8
NK_42
25.7
NK_43
25.5
NK_44
25.4
NK_45
25.3
NK_46
25.3
NK_47
25.3
NK_48
25.2
NK_49
25.1
NK_50
25.1
NK_51
25.1
NK_52
24.9
NK_53
24.9
NK_54
24.8
NK_55
24.8
NK_56
24.8
NK_57
24.7
NK_58
24.5
NK_59
24.4
NK_60
24.2
NK_61
24.2
NK_62
24.1
NK_63
24.0
NK_64
23.9
NK_65
23.9
NK_66
23.5
NK_67
23.4
NK_68
23.4
NK_69
23.4
NK_70
23.4
NK_71
23.3
NK_72
23.3
NK_73
23.3
NK_74
22.8
NK_75
22.8
NK_76
22.6
NK_77
22.6
NK_78
22.6
NK_79
22.5
NK_80
22.5
NK_81
22.4
NK_82
22.3
NK_83
22.2
NK_84
21.8
NK_85
21.8
NK_86
21.6
NK_87
21.5
NK_88
21.3
NK_89
20.6
NK_90
18.2
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