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  • RPS17
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1446.8 nTPM
HPA Brain:434.5 nTPM
GTEx:1446.8 nTPM
FANTOM5:47.6 Scaled Tags Per Million
Pig:181.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

434.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 351.4
2565 Male, age 75, midline 428.3
1981 Female, age 72, midline 402.0
2048 Male, age 55, midline 365.2
2816 Male, age 47, midline 293.7
2194 Female, age 79, both hemispheres 267.6
Cervical spinal cord, dorsal horn
nTPM: 361.1
2069 Male, age 47, both hemispheres 457.6
2173 Female, age 72, unknown 445.2
1877 Male, age 55, unknown 376.2
2296 Male, age 66, both hemispheres 365.7
2721 Male, age 90, both hemispheres 275.1
2297 Male, age 75, both hemispheres 246.6
Cervical spinal cord, ventral horn
nTPM: 434.5
2480 Male, age 75, both hemispheres 585.8
2809 Male, age 90, both hemispheres 539.7
2098 Female, age 72, unknown 507.0
2295 Male, age 66, both hemispheres 403.3
2068 Male, age 55, unknown 360.2
2820 Female, age 79, both hemispheres 210.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1446.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1446.8
Samples: 204

Max nTPM: 3824.2
Min nTPM: 551.5
Std nTPM: 478.3
Median nTPM: 1401.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 3824.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2660.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 2553.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2495.2
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 2476.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 2429.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2419.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 2411.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 2399.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 2378.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 2354.2
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 2351.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 2350.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 2243.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 2238.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 2237.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 2203.6
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 2151.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 2122.7
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 2121.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 2087.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 2081.2
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 2076.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 2072.3
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 2064.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 2051.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 2030.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 2011.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2009.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 2004.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1999.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 1939.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1914.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1909.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1882.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1881.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1865.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1854.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1853.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1829.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1825.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1806.5
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 1805.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1787.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1785.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1777.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1753.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1742.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1735.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1717.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1686.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1681.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 1679.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1677.7
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 1660.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1649.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 1642.9
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 1638.8
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 1637.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1616.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1597.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 1590.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1586.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1583.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1575.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1565.5
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 1565.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1564.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1554.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1552.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1548.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1547.5
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 1537.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1535.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 1531.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1527.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 1524.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 1521.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1519.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 1519.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 1517.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1512.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1502.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1495.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1493.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1479.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 1475.6
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 1471.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1461.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1460.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1459.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 1451.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 1445.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1433.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1433.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1425.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 1419.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1411.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1410.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1409.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1408.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 1404.1
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 1397.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 1389.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1384.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1380.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1371.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1363.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1363.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1361.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1343.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1337.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1317.3
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 1317.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1314.6
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 1309.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1307.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1306.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1288.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1282.1
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 1275.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1274.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1272.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1268.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1248.8
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 1248.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1246.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1246.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 1232.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1229.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1218.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1214.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1213.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1212.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1205.7
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 1205.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1200.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1197.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1190.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 1187.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1172.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1166.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1162.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 1155.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1150.0
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 1148.7
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 1126.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1116.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1115.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1090.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1087.0
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 1073.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1069.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1067.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1062.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1046.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1035.7
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 1029.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1028.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1028.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1027.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1022.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1021.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1021.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1020.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 1018.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1017.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1017.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1005.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1003.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 995.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 994.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 990.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 988.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 973.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 961.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 958.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 958.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 955.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 938.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 932.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 932.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 924.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 921.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 918.1
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 915.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 896.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 872.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 855.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 835.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 813.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 811.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 809.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 797.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 791.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 791.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 781.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 760.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 736.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 736.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 731.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 704.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 597.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 551.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

47.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 47.6
FF:10181-103D1 60 years, female 59.0
FF:10159-103A6 76 years, female 36.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

181.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 181.5
Samples: 4

Max nTPM: 254.6
Min nTPM: 127.9
Sample A Female 138.3
Sample B Female 205.2
Sample C Male 254.6
Sample D Male 127.9
Ventral spinal cord
nTPM: 164.0
Samples: 4

Max nTPM: 181.3
Min nTPM: 143.7
Sample A Female 143.7
Sample B Female 175.0
Sample C Male 181.3
Sample D Male 156.1

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