A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2382.3
nTPM
Monaco:
577.5
nTPM
Schmiedel:
535.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2382.3
HPA sample
nTPM
Memory B-cell nTPM: 2382.3
Samples: 6
Max nTPM: 2884.1
Min nTPM: 1814.7
P10809_1017
1814.7
P10809_1025
2532.7
P10809_1044
2884.1
P10809_1063
2405.3
P10809_1092
2182.0
P10809_1105
2474.7
Naive B-cell nTPM: 2183.9
Samples: 6
Max nTPM: 2527.7
Min nTPM: 1668.9
P10809_1011
1668.9
P10809_1029
2134.8
P10809_1048
2382.2
P10809_1067
2382.2
P10809_1091
2007.3
P10809_1104
2527.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
577.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 527.1
Samples: 4
Max nTPM: 863.7
Min nTPM: 140.4
RHH5310_R3677
419.4
RHH5218_R3590
140.4
RHH5247_R3619
863.7
RHH5276_R3648
684.9
Naive B-cell nTPM: 577.5
Samples: 4
Max nTPM: 1036.6
Min nTPM: 187.2
RHH5308_R3675
649.8
RHH5216_R3588
187.2
RHH5245_R3617
1036.6
RHH5274_R3646
436.4
Non-switched memory B-cell nTPM: 391.6
Samples: 4
Max nTPM: 656.3
Min nTPM: 175.1
RHH5309_R3676
557.3
RHH5217_R3589
177.6
RHH5246_R3618
175.1
RHH5275_R3647
656.3
Plasmablast nTPM: 432.0
Samples: 4
Max nTPM: 586.3
Min nTPM: 246.0
RHH5312_R3679
586.3
RHH5220_R3592
246.0
RHH5249_R3621
359.9
RHH5278_R3650
535.8
Switched memory B-cell nTPM: 359.6
Samples: 4
Max nTPM: 500.0
Min nTPM: 218.3
RHH5311_R3678
441.3
RHH5219_R3591
278.9
RHH5248_R3620
218.3
RHH5277_R3649
500.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
535.5
Schmiedel sample id
TPM
Naive B-cell TPM: 535.5
Samples: 91
Max TPM: 670.6
Min TPM: 378.1
B_CELL_NAIVE_1
670.6
B_CELL_NAIVE_2
666.3
B_CELL_NAIVE_3
658.8
B_CELL_NAIVE_4
657.3
B_CELL_NAIVE_5
634.9
B_CELL_NAIVE_6
633.7
B_CELL_NAIVE_7
621.3
B_CELL_NAIVE_8
618.9
B_CELL_NAIVE_9
618.6
B_CELL_NAIVE_10
613.7
B_CELL_NAIVE_11
611.9
B_CELL_NAIVE_12
606.1
B_CELL_NAIVE_13
605.3
B_CELL_NAIVE_14
597.0
B_CELL_NAIVE_15
588.4
B_CELL_NAIVE_16
587.9
B_CELL_NAIVE_17
584.3
B_CELL_NAIVE_18
583.1
B_CELL_NAIVE_19
581.6
B_CELL_NAIVE_20
581.5
B_CELL_NAIVE_21
581.4
B_CELL_NAIVE_22
580.0
B_CELL_NAIVE_23
579.4
B_CELL_NAIVE_24
575.0
B_CELL_NAIVE_25
573.1
B_CELL_NAIVE_26
571.8
B_CELL_NAIVE_27
571.2
B_CELL_NAIVE_28
570.4
B_CELL_NAIVE_29
570.0
B_CELL_NAIVE_30
566.5
B_CELL_NAIVE_31
566.1
B_CELL_NAIVE_32
565.4
B_CELL_NAIVE_33
563.7
B_CELL_NAIVE_34
561.8
B_CELL_NAIVE_35
558.0
B_CELL_NAIVE_36
557.5
B_CELL_NAIVE_37
552.0
B_CELL_NAIVE_38
551.1
B_CELL_NAIVE_39
550.4
B_CELL_NAIVE_40
543.5
B_CELL_NAIVE_41
542.3
B_CELL_NAIVE_42
542.1
B_CELL_NAIVE_43
539.9
B_CELL_NAIVE_44
536.7
B_CELL_NAIVE_45
536.6
B_CELL_NAIVE_46
533.9
B_CELL_NAIVE_47
533.6
B_CELL_NAIVE_48
533.5
B_CELL_NAIVE_49
532.7
B_CELL_NAIVE_50
528.6
B_CELL_NAIVE_51
526.3
B_CELL_NAIVE_52
525.5
B_CELL_NAIVE_53
525.1
B_CELL_NAIVE_54
517.6
B_CELL_NAIVE_55
517.3
B_CELL_NAIVE_56
515.4
B_CELL_NAIVE_57
513.7
B_CELL_NAIVE_58
512.7
B_CELL_NAIVE_59
512.0
B_CELL_NAIVE_60
510.5
B_CELL_NAIVE_61
509.0
B_CELL_NAIVE_62
506.9
B_CELL_NAIVE_63
505.9
B_CELL_NAIVE_64
504.8
B_CELL_NAIVE_65
500.2
B_CELL_NAIVE_66
498.0
B_CELL_NAIVE_67
496.3
B_CELL_NAIVE_68
493.1
B_CELL_NAIVE_69
492.9
B_CELL_NAIVE_70
487.0
B_CELL_NAIVE_71
484.7
B_CELL_NAIVE_72
484.1
B_CELL_NAIVE_73
484.0
B_CELL_NAIVE_74
480.0
B_CELL_NAIVE_75
479.4
B_CELL_NAIVE_76
477.3
B_CELL_NAIVE_77
474.4
B_CELL_NAIVE_78
474.3
B_CELL_NAIVE_79
470.5
B_CELL_NAIVE_80
467.2
B_CELL_NAIVE_81
466.9
B_CELL_NAIVE_82
464.5
B_CELL_NAIVE_83
459.0
B_CELL_NAIVE_84
451.4
B_CELL_NAIVE_85
448.5
B_CELL_NAIVE_86
436.6
B_CELL_NAIVE_87
428.2
B_CELL_NAIVE_88
421.9
B_CELL_NAIVE_89
421.6
B_CELL_NAIVE_90
421.5
B_CELL_NAIVE_91
378.1
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.