A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1077.2
nTPM
Monaco:
302.1
nTPM
Schmiedel:
240.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1077.2
HPA sample
nTPM
Classical monocyte nTPM: 1077.2
Samples: 6
Max nTPM: 1616.3
Min nTPM: 729.4
P10809_1003
1616.3
P10809_1020
896.3
P10809_1039
1048.5
P10809_1058
980.5
P10809_1080
729.4
P10809_1107
1192.1
Intermediate monocyte nTPM: 952.0
Samples: 6
Max nTPM: 1521.2
Min nTPM: 589.8
P10809_1004
700.2
P10809_1023
1116.9
P10809_1042
996.4
P10809_1061
589.8
P10809_1081
787.6
P10809_1108
1521.2
Non-classical monocyte nTPM: 864.3
Samples: 5
Max nTPM: 1183.6
Min nTPM: 690.2
P10809_1005
809.1
P10809_1053
804.1
P10809_1072
834.4
P10809_1082
690.2
P10809_1109
1183.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
302.1
Monaco sample
nTPM
Classical monocyte nTPM: 198.0
Samples: 4
Max nTPM: 285.2
Min nTPM: 143.1
RHH5313_R3680
285.2
RHH5221_R3593
151.3
RHH5250_R3622
143.1
RHH5279_R3651
212.5
Intermediate monocyte nTPM: 302.1
Samples: 4
Max nTPM: 356.9
Min nTPM: 215.5
RHH5314_R3681
322.2
RHH5222_R3594
313.7
RHH5251_R3623
356.9
RHH5280_R3652
215.5
Non-classical monocyte nTPM: 222.6
Samples: 4
Max nTPM: 305.9
Min nTPM: 137.2
RHH5315_R3682
305.9
RHH5223_R3595
165.6
RHH5252_R3624
281.8
RHH5281_R3653
137.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
240.0
Schmiedel sample id
TPM
Classical monocyte TPM: 240.0
Samples: 91
Max TPM: 309.3
Min TPM: 173.3
MONOCYTES_1
309.3
MONOCYTES_2
302.1
MONOCYTES_3
301.1
MONOCYTES_4
295.4
MONOCYTES_5
280.5
MONOCYTES_6
272.2
MONOCYTES_7
272.0
MONOCYTES_8
271.1
MONOCYTES_9
270.2
MONOCYTES_10
265.1
MONOCYTES_11
264.9
MONOCYTES_12
262.7
MONOCYTES_13
262.3
MONOCYTES_14
261.7
MONOCYTES_15
260.7
MONOCYTES_16
260.3
MONOCYTES_17
259.2
MONOCYTES_18
257.0
MONOCYTES_19
256.9
MONOCYTES_20
256.9
MONOCYTES_21
256.7
MONOCYTES_22
256.3
MONOCYTES_23
253.9
MONOCYTES_24
253.3
MONOCYTES_25
251.4
MONOCYTES_26
250.7
MONOCYTES_27
250.1
MONOCYTES_28
249.8
MONOCYTES_29
249.5
MONOCYTES_30
248.5
MONOCYTES_31
248.0
MONOCYTES_32
247.8
MONOCYTES_33
246.9
MONOCYTES_34
246.5
MONOCYTES_35
245.7
MONOCYTES_36
244.8
MONOCYTES_37
244.7
MONOCYTES_38
244.6
MONOCYTES_39
244.5
MONOCYTES_40
244.3
MONOCYTES_41
243.6
MONOCYTES_42
243.4
MONOCYTES_43
242.0
MONOCYTES_44
241.9
MONOCYTES_45
241.6
MONOCYTES_46
241.1
MONOCYTES_47
240.1
MONOCYTES_48
238.5
MONOCYTES_49
238.4
MONOCYTES_50
237.5
MONOCYTES_51
237.2
MONOCYTES_52
236.3
MONOCYTES_53
236.3
MONOCYTES_54
234.0
MONOCYTES_55
233.9
MONOCYTES_56
233.3
MONOCYTES_57
233.3
MONOCYTES_58
232.6
MONOCYTES_59
232.4
MONOCYTES_60
231.6
MONOCYTES_61
231.4
MONOCYTES_62
230.6
MONOCYTES_63
230.5
MONOCYTES_64
229.8
MONOCYTES_65
229.7
MONOCYTES_66
229.4
MONOCYTES_67
228.8
MONOCYTES_68
228.8
MONOCYTES_69
228.4
MONOCYTES_70
228.4
MONOCYTES_71
228.3
MONOCYTES_72
225.8
MONOCYTES_73
224.0
MONOCYTES_74
222.4
MONOCYTES_75
217.7
MONOCYTES_76
217.6
MONOCYTES_77
215.6
MONOCYTES_78
214.6
MONOCYTES_79
210.8
MONOCYTES_80
209.8
MONOCYTES_81
209.4
MONOCYTES_82
208.9
MONOCYTES_83
208.9
MONOCYTES_84
206.7
MONOCYTES_85
204.3
MONOCYTES_86
203.6
MONOCYTES_87
202.5
MONOCYTES_88
193.3
MONOCYTES_89
188.9
MONOCYTES_90
186.7
MONOCYTES_91
173.3
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Non-classical monocyte TPM: 215.8
Samples: 90
Max TPM: 319.2
Min TPM: 165.4
M2_1
319.2
M2_2
278.4
M2_3
275.3
M2_4
257.7
M2_5
251.6
M2_6
247.9
M2_7
247.2
M2_8
245.9
M2_9
241.5
M2_10
241.2
M2_11
240.9
M2_12
237.0
M2_13
234.2
M2_14
234.0
M2_15
233.7
M2_16
233.1
M2_17
231.3
M2_18
231.1
M2_19
230.7
M2_20
229.1
M2_21
228.5
M2_22
227.8
M2_23
227.4
M2_24
227.3
M2_25
227.3
M2_26
226.6
M2_27
226.1
M2_28
224.4
M2_29
224.4
M2_30
223.2
M2_31
223.0
M2_32
222.8
M2_33
222.0
M2_34
222.0
M2_35
221.6
M2_36
221.3
M2_37
220.4
M2_38
220.2
M2_39
219.9
M2_40
219.8
M2_41
218.5
M2_42
218.2
M2_43
217.9
M2_44
217.5
M2_45
214.8
M2_46
214.4
M2_47
213.5
M2_48
211.9
M2_49
211.1
M2_50
208.8
M2_51
208.5
M2_52
208.2
M2_53
208.2
M2_54
208.1
M2_55
208.1
M2_56
207.4
M2_57
207.3
M2_58
206.8
M2_59
206.5
M2_60
206.5
M2_61
205.2
M2_62
203.9
M2_63
203.3
M2_64
201.9
M2_65
201.2
M2_66
201.2
M2_67
200.9
M2_68
200.8
M2_69
200.4
M2_70
199.1
M2_71
198.3
M2_72
197.9
M2_73
197.2
M2_74
196.8
M2_75
196.4
M2_76
195.7
M2_77
195.6
M2_78
195.0
M2_79
194.5
M2_80
191.6
M2_81
190.4
M2_82
188.4
M2_83
188.2
M2_84
183.2
M2_85
181.2
M2_86
180.3
M2_87
179.9
M2_88
178.1
M2_89
174.2
M2_90
165.4
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