A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1338.7
nTPM
Monaco:
179.4
nTPM
Schmiedel:
320.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1338.7
HPA sample
nTPM
NK-cell nTPM: 1338.8
Samples: 6
Max nTPM: 1706.0
Min nTPM: 571.3
P10809_1013
1223.8
P10809_1033
1706.0
P10809_1052
1396.3
P10809_1071
1637.2
P10809_1093
571.3
P10809_1103
1497.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
179.4
Monaco sample
nTPM
NK-cell nTPM: 179.4
Samples: 4
Max nTPM: 205.3
Min nTPM: 135.2
RHH5316_R3683
205.3
RHH5224_R3596
135.2
RHH5253_R3625
189.1
RHH5282_R3654
188.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
320.0
Schmiedel sample id
TPM
NK-cell TPM: 320.1
Samples: 90
Max TPM: 500.0
Min TPM: 238.5
NK_1
500.0
NK_2
423.4
NK_3
403.2
NK_4
395.1
NK_5
392.8
NK_6
383.7
NK_7
380.5
NK_8
379.3
NK_9
371.4
NK_10
368.3
NK_11
367.6
NK_12
366.7
NK_13
363.7
NK_14
363.4
NK_15
362.5
NK_16
360.3
NK_17
359.6
NK_18
349.6
NK_19
349.5
NK_20
348.9
NK_21
348.0
NK_22
340.6
NK_23
339.5
NK_24
337.0
NK_25
336.8
NK_26
336.5
NK_27
335.6
NK_28
332.1
NK_29
331.8
NK_30
331.3
NK_31
330.8
NK_32
328.8
NK_33
328.1
NK_34
326.3
NK_35
325.9
NK_36
324.3
NK_37
323.2
NK_38
323.2
NK_39
322.9
NK_40
322.3
NK_41
321.3
NK_42
318.8
NK_43
318.0
NK_44
316.9
NK_45
314.8
NK_46
314.3
NK_47
313.7
NK_48
311.5
NK_49
311.2
NK_50
311.2
NK_51
309.5
NK_52
309.4
NK_53
309.1
NK_54
308.6
NK_55
308.2
NK_56
307.7
NK_57
307.1
NK_58
306.1
NK_59
305.9
NK_60
305.0
NK_61
302.8
NK_62
302.4
NK_63
302.2
NK_64
301.9
NK_65
295.9
NK_66
293.9
NK_67
293.0
NK_68
291.8
NK_69
287.5
NK_70
286.6
NK_71
285.1
NK_72
281.5
NK_73
281.4
NK_74
281.1
NK_75
280.8
NK_76
280.5
NK_77
280.4
NK_78
277.9
NK_79
276.9
NK_80
276.8
NK_81
272.7
NK_82
269.7
NK_83
269.4
NK_84
269.1
NK_85
268.9
NK_86
259.0
NK_87
256.0
NK_88
255.7
NK_89
242.3
NK_90
238.5
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