A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1227.4
nTPM
Monaco:
199.9
nTPM
Schmiedel:
903.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1227.4
HPA sample
nTPM
Memory B-cell nTPM: 1227.4
Samples: 6
Max nTPM: 1813.1
Min nTPM: 973.5
P10809_1017
998.9
P10809_1025
1182.1
P10809_1044
973.5
P10809_1063
1203.1
P10809_1092
1193.8
P10809_1105
1813.1
Naive B-cell nTPM: 1109.3
Samples: 6
Max nTPM: 1772.5
Min nTPM: 800.5
P10809_1011
879.0
P10809_1029
998.9
P10809_1048
800.5
P10809_1067
1209.4
P10809_1091
995.6
P10809_1104
1772.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
199.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 177.7
Samples: 4
Max nTPM: 265.8
Min nTPM: 40.9
RHH5310_R3677
163.3
RHH5218_R3590
40.9
RHH5247_R3619
265.8
RHH5276_R3648
240.9
Naive B-cell nTPM: 199.9
Samples: 4
Max nTPM: 398.9
Min nTPM: 37.3
RHH5308_R3675
196.0
RHH5216_R3588
37.3
RHH5245_R3617
398.9
RHH5274_R3646
167.2
Non-switched memory B-cell nTPM: 128.1
Samples: 4
Max nTPM: 272.6
Min nTPM: 32.9
RHH5309_R3676
146.6
RHH5217_R3589
60.4
RHH5246_R3618
32.9
RHH5275_R3647
272.6
Plasmablast nTPM: 186.7
Samples: 4
Max nTPM: 254.9
Min nTPM: 110.9
RHH5312_R3679
254.9
RHH5220_R3592
110.9
RHH5249_R3621
182.8
RHH5278_R3650
198.2
Switched memory B-cell nTPM: 128.1
Samples: 4
Max nTPM: 207.5
Min nTPM: 68.3
RHH5311_R3678
122.1
RHH5219_R3591
114.5
RHH5248_R3620
68.3
RHH5277_R3649
207.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
903.2
Schmiedel sample id
TPM
Naive B-cell TPM: 903.2
Samples: 91
Max TPM: 1078.4
Min TPM: 541.4
B_CELL_NAIVE_1
1078.4
B_CELL_NAIVE_2
1077.2
B_CELL_NAIVE_3
1049.5
B_CELL_NAIVE_4
1046.7
B_CELL_NAIVE_5
1041.4
B_CELL_NAIVE_6
1035.6
B_CELL_NAIVE_7
1034.1
B_CELL_NAIVE_8
1027.6
B_CELL_NAIVE_9
1016.8
B_CELL_NAIVE_10
1005.4
B_CELL_NAIVE_11
1001.5
B_CELL_NAIVE_12
999.3
B_CELL_NAIVE_13
993.7
B_CELL_NAIVE_14
993.5
B_CELL_NAIVE_15
989.7
B_CELL_NAIVE_16
985.5
B_CELL_NAIVE_17
982.6
B_CELL_NAIVE_18
982.2
B_CELL_NAIVE_19
980.8
B_CELL_NAIVE_20
975.9
B_CELL_NAIVE_21
971.1
B_CELL_NAIVE_22
964.3
B_CELL_NAIVE_23
959.1
B_CELL_NAIVE_24
957.3
B_CELL_NAIVE_25
957.2
B_CELL_NAIVE_26
956.2
B_CELL_NAIVE_27
955.8
B_CELL_NAIVE_28
955.7
B_CELL_NAIVE_29
945.5
B_CELL_NAIVE_30
943.6
B_CELL_NAIVE_31
941.4
B_CELL_NAIVE_32
940.1
B_CELL_NAIVE_33
934.6
B_CELL_NAIVE_34
932.8
B_CELL_NAIVE_35
930.3
B_CELL_NAIVE_36
930.3
B_CELL_NAIVE_37
928.2
B_CELL_NAIVE_38
928.0
B_CELL_NAIVE_39
925.9
B_CELL_NAIVE_40
923.9
B_CELL_NAIVE_41
923.5
B_CELL_NAIVE_42
915.2
B_CELL_NAIVE_43
913.8
B_CELL_NAIVE_44
913.5
B_CELL_NAIVE_45
911.7
B_CELL_NAIVE_46
906.3
B_CELL_NAIVE_47
904.0
B_CELL_NAIVE_48
903.6
B_CELL_NAIVE_49
901.6
B_CELL_NAIVE_50
900.4
B_CELL_NAIVE_51
895.8
B_CELL_NAIVE_52
889.6
B_CELL_NAIVE_53
889.2
B_CELL_NAIVE_54
888.3
B_CELL_NAIVE_55
885.5
B_CELL_NAIVE_56
881.8
B_CELL_NAIVE_57
879.6
B_CELL_NAIVE_58
876.5
B_CELL_NAIVE_59
875.6
B_CELL_NAIVE_60
875.3
B_CELL_NAIVE_61
873.2
B_CELL_NAIVE_62
871.9
B_CELL_NAIVE_63
869.7
B_CELL_NAIVE_64
869.5
B_CELL_NAIVE_65
859.7
B_CELL_NAIVE_66
858.8
B_CELL_NAIVE_67
858.6
B_CELL_NAIVE_68
858.3
B_CELL_NAIVE_69
854.8
B_CELL_NAIVE_70
849.9
B_CELL_NAIVE_71
844.9
B_CELL_NAIVE_72
844.7
B_CELL_NAIVE_73
827.0
B_CELL_NAIVE_74
826.4
B_CELL_NAIVE_75
821.5
B_CELL_NAIVE_76
821.5
B_CELL_NAIVE_77
820.7
B_CELL_NAIVE_78
811.6
B_CELL_NAIVE_79
809.6
B_CELL_NAIVE_80
803.3
B_CELL_NAIVE_81
803.3
B_CELL_NAIVE_82
800.0
B_CELL_NAIVE_83
789.9
B_CELL_NAIVE_84
782.4
B_CELL_NAIVE_85
781.0
B_CELL_NAIVE_86
773.3
B_CELL_NAIVE_87
770.6
B_CELL_NAIVE_88
770.0
B_CELL_NAIVE_89
759.9
B_CELL_NAIVE_90
650.3
B_CELL_NAIVE_91
541.4
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