A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
743.5
nTPM
Monaco:
61.3
nTPM
Schmiedel:
529.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
743.5
HPA sample
nTPM
NK-cell nTPM: 743.5
Samples: 6
Max nTPM: 1100.6
Min nTPM: 447.5
P10809_1013
772.3
P10809_1033
731.9
P10809_1052
605.2
P10809_1071
803.4
P10809_1093
447.5
P10809_1103
1100.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
61.3
Monaco sample
nTPM
NK-cell nTPM: 61.3
Samples: 4
Max nTPM: 80.3
Min nTPM: 42.4
RHH5316_R3683
58.1
RHH5224_R3596
42.4
RHH5253_R3625
80.3
RHH5282_R3654
64.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
529.8
Schmiedel sample id
TPM
NK-cell TPM: 529.8
Samples: 90
Max TPM: 807.2
Min TPM: 344.7
NK_1
807.2
NK_2
803.3
NK_3
721.3
NK_4
701.4
NK_5
663.8
NK_6
657.2
NK_7
647.3
NK_8
643.0
NK_9
638.6
NK_10
635.4
NK_11
628.7
NK_12
625.9
NK_13
617.1
NK_14
601.3
NK_15
600.7
NK_16
599.1
NK_17
598.2
NK_18
594.1
NK_19
593.9
NK_20
581.2
NK_21
580.7
NK_22
568.9
NK_23
565.7
NK_24
565.6
NK_25
565.3
NK_26
563.8
NK_27
560.0
NK_28
554.2
NK_29
552.7
NK_30
552.2
NK_31
549.8
NK_32
545.5
NK_33
545.4
NK_34
545.3
NK_35
545.2
NK_36
543.5
NK_37
543.5
NK_38
542.4
NK_39
536.8
NK_40
532.3
NK_41
530.2
NK_42
529.2
NK_43
528.2
NK_44
527.4
NK_45
526.9
NK_46
526.2
NK_47
520.6
NK_48
517.6
NK_49
516.0
NK_50
515.6
NK_51
515.3
NK_52
512.2
NK_53
510.0
NK_54
508.2
NK_55
504.4
NK_56
497.2
NK_57
496.4
NK_58
494.3
NK_59
489.6
NK_60
486.2
NK_61
485.8
NK_62
484.4
NK_63
484.0
NK_64
483.2
NK_65
482.7
NK_66
481.5
NK_67
477.1
NK_68
475.0
NK_69
473.3
NK_70
472.7
NK_71
472.3
NK_72
470.2
NK_73
469.3
NK_74
463.5
NK_75
459.3
NK_76
458.0
NK_77
456.0
NK_78
450.8
NK_79
450.7
NK_80
446.4
NK_81
440.7
NK_82
429.0
NK_83
421.4
NK_84
420.2
NK_85
411.8
NK_86
405.8
NK_87
402.1
NK_88
397.2
NK_89
345.9
NK_90
344.7
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