A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
740.0
nTPM
Monaco:
136.8
nTPM
Schmiedel:
563.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
740.0
HPA sample
nTPM
Classical monocyte nTPM: 740.0
Samples: 6
Max nTPM: 1043.0
Min nTPM: 495.1
P10809_1003
1043.0
P10809_1020
495.1
P10809_1039
678.1
P10809_1058
630.3
P10809_1080
568.8
P10809_1107
1024.9
Intermediate monocyte nTPM: 544.1
Samples: 6
Max nTPM: 1162.7
Min nTPM: 342.6
P10809_1004
346.0
P10809_1023
543.2
P10809_1042
342.6
P10809_1061
343.0
P10809_1081
527.1
P10809_1108
1162.7
Non-classical monocyte nTPM: 516.0
Samples: 5
Max nTPM: 826.0
Min nTPM: 353.5
P10809_1005
427.7
P10809_1053
390.0
P10809_1072
353.5
P10809_1082
582.6
P10809_1109
826.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
136.8
Monaco sample
nTPM
Classical monocyte nTPM: 84.3
Samples: 4
Max nTPM: 120.3
Min nTPM: 66.1
RHH5313_R3680
120.3
RHH5221_R3593
66.1
RHH5250_R3622
71.1
RHH5279_R3651
79.5
Intermediate monocyte nTPM: 136.8
Samples: 4
Max nTPM: 195.7
Min nTPM: 66.6
RHH5314_R3681
128.9
RHH5222_R3594
155.9
RHH5251_R3623
195.7
RHH5280_R3652
66.6
Non-classical monocyte nTPM: 81.5
Samples: 4
Max nTPM: 102.3
Min nTPM: 35.6
RHH5315_R3682
97.4
RHH5223_R3595
90.5
RHH5252_R3624
102.3
RHH5281_R3653
35.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
563.7
Schmiedel sample id
TPM
Classical monocyte TPM: 563.7
Samples: 91
Max TPM: 713.2
Min TPM: 442.8
MONOCYTES_1
713.2
MONOCYTES_2
709.9
MONOCYTES_3
703.4
MONOCYTES_4
679.4
MONOCYTES_5
678.2
MONOCYTES_6
674.4
MONOCYTES_7
657.3
MONOCYTES_8
651.5
MONOCYTES_9
648.1
MONOCYTES_10
644.5
MONOCYTES_11
640.1
MONOCYTES_12
634.8
MONOCYTES_13
613.5
MONOCYTES_14
612.8
MONOCYTES_15
610.6
MONOCYTES_16
608.1
MONOCYTES_17
605.5
MONOCYTES_18
605.0
MONOCYTES_19
602.7
MONOCYTES_20
602.6
MONOCYTES_21
602.0
MONOCYTES_22
599.1
MONOCYTES_23
594.5
MONOCYTES_24
593.3
MONOCYTES_25
593.2
MONOCYTES_26
589.2
MONOCYTES_27
588.2
MONOCYTES_28
588.1
MONOCYTES_29
587.9
MONOCYTES_30
587.6
MONOCYTES_31
586.9
MONOCYTES_32
582.8
MONOCYTES_33
579.0
MONOCYTES_34
577.6
MONOCYTES_35
576.3
MONOCYTES_36
575.3
MONOCYTES_37
572.9
MONOCYTES_38
571.9
MONOCYTES_39
569.7
MONOCYTES_40
568.4
MONOCYTES_41
568.1
MONOCYTES_42
566.6
MONOCYTES_43
562.7
MONOCYTES_44
560.6
MONOCYTES_45
558.9
MONOCYTES_46
551.9
MONOCYTES_47
549.2
MONOCYTES_48
547.7
MONOCYTES_49
546.8
MONOCYTES_50
546.7
MONOCYTES_51
546.1
MONOCYTES_52
545.4
MONOCYTES_53
543.6
MONOCYTES_54
541.7
MONOCYTES_55
539.3
MONOCYTES_56
539.1
MONOCYTES_57
537.6
MONOCYTES_58
533.5
MONOCYTES_59
533.3
MONOCYTES_60
533.2
MONOCYTES_61
533.2
MONOCYTES_62
530.1
MONOCYTES_63
528.8
MONOCYTES_64
528.6
MONOCYTES_65
528.3
MONOCYTES_66
528.1
MONOCYTES_67
525.4
MONOCYTES_68
525.4
MONOCYTES_69
521.8
MONOCYTES_70
520.8
MONOCYTES_71
520.6
MONOCYTES_72
520.6
MONOCYTES_73
519.6
MONOCYTES_74
518.2
MONOCYTES_75
516.8
MONOCYTES_76
516.5
MONOCYTES_77
513.0
MONOCYTES_78
510.9
MONOCYTES_79
510.9
MONOCYTES_80
510.0
MONOCYTES_81
504.5
MONOCYTES_82
500.6
MONOCYTES_83
498.8
MONOCYTES_84
497.8
MONOCYTES_85
494.7
MONOCYTES_86
493.4
MONOCYTES_87
485.9
MONOCYTES_88
484.8
MONOCYTES_89
469.8
MONOCYTES_90
465.0
MONOCYTES_91
442.8
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Non-classical monocyte TPM: 425.7
Samples: 90
Max TPM: 564.5
Min TPM: 337.6
M2_1
564.5
M2_2
527.2
M2_3
525.1
M2_4
521.9
M2_5
512.4
M2_6
510.6
M2_7
506.0
M2_8
506.0
M2_9
492.3
M2_10
490.1
M2_11
488.1
M2_12
487.3
M2_13
486.0
M2_14
486.0
M2_15
482.2
M2_16
476.6
M2_17
475.3
M2_18
470.8
M2_19
469.4
M2_20
463.8
M2_21
463.5
M2_22
460.1
M2_23
459.0
M2_24
451.1
M2_25
450.2
M2_26
449.1
M2_27
448.0
M2_28
447.0
M2_29
445.9
M2_30
444.8
M2_31
444.3
M2_32
442.8
M2_33
440.7
M2_34
440.6
M2_35
439.1
M2_36
438.8
M2_37
430.8
M2_38
427.2
M2_39
427.0
M2_40
423.5
M2_41
423.2
M2_42
416.2
M2_43
415.8
M2_44
415.0
M2_45
414.2
M2_46
413.5
M2_47
413.5
M2_48
413.2
M2_49
412.5
M2_50
412.3
M2_51
411.7
M2_52
410.9
M2_53
409.1
M2_54
408.7
M2_55
406.5
M2_56
404.2
M2_57
404.2
M2_58
400.0
M2_59
397.8
M2_60
396.4
M2_61
396.3
M2_62
395.9
M2_63
395.8
M2_64
395.1
M2_65
394.2
M2_66
392.7
M2_67
391.5
M2_68
391.2
M2_69
390.7
M2_70
385.8
M2_71
384.6
M2_72
383.0
M2_73
382.6
M2_74
382.1
M2_75
379.4
M2_76
379.3
M2_77
379.0
M2_78
378.5
M2_79
377.9
M2_80
377.9
M2_81
374.5
M2_82
374.3
M2_83
372.2
M2_84
359.7
M2_85
357.1
M2_86
352.4
M2_87
347.6
M2_88
346.7
M2_89
339.2
M2_90
337.6
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