A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
54.8
nTPM
Monaco:
167.2
nTPM
Schmiedel:
9.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
54.8
HPA sample
nTPM
Memory B-cell nTPM: 54.8
Samples: 6
Max nTPM: 118.7
Min nTPM: 33.4
P10809_1017
41.0
P10809_1025
51.5
P10809_1044
118.7
P10809_1063
33.4
P10809_1092
45.5
P10809_1105
38.5
Naive B-cell nTPM: 52.8
Samples: 6
Max nTPM: 115.2
Min nTPM: 29.2
P10809_1011
29.2
P10809_1029
46.5
P10809_1048
115.2
P10809_1067
31.7
P10809_1091
45.6
P10809_1104
48.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
167.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 62.7
Samples: 4
Max nTPM: 97.2
Min nTPM: 42.8
RHH5310_R3677
97.2
RHH5218_R3590
57.0
RHH5247_R3619
53.8
RHH5276_R3648
42.8
Naive B-cell nTPM: 52.2
Samples: 4
Max nTPM: 79.6
Min nTPM: 17.5
RHH5308_R3675
42.5
RHH5216_R3588
79.6
RHH5245_R3617
17.5
RHH5274_R3646
69.0
Non-switched memory B-cell nTPM: 64.3
Samples: 4
Max nTPM: 73.5
Min nTPM: 51.4
RHH5309_R3676
68.3
RHH5217_R3589
63.9
RHH5246_R3618
73.5
RHH5275_R3647
51.4
Plasmablast nTPM: 167.2
Samples: 4
Max nTPM: 258.6
Min nTPM: 123.9
RHH5312_R3679
131.5
RHH5220_R3592
258.6
RHH5249_R3621
154.8
RHH5278_R3650
123.9
Switched memory B-cell nTPM: 70.6
Samples: 4
Max nTPM: 103.6
Min nTPM: 50.6
RHH5311_R3678
103.6
RHH5219_R3591
63.4
RHH5248_R3620
64.8
RHH5277_R3649
50.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.9
Schmiedel sample id
TPM
Naive B-cell TPM: 9.9
Samples: 91
Max TPM: 19.5
Min TPM: 1.5
B_CELL_NAIVE_1
19.5
B_CELL_NAIVE_2
17.7
B_CELL_NAIVE_3
17.4
B_CELL_NAIVE_4
16.5
B_CELL_NAIVE_5
16.3
B_CELL_NAIVE_6
15.4
B_CELL_NAIVE_7
15.4
B_CELL_NAIVE_8
14.6
B_CELL_NAIVE_9
14.4
B_CELL_NAIVE_10
14.4
B_CELL_NAIVE_11
14.0
B_CELL_NAIVE_12
13.9
B_CELL_NAIVE_13
13.8
B_CELL_NAIVE_14
13.6
B_CELL_NAIVE_15
13.3
B_CELL_NAIVE_16
13.2
B_CELL_NAIVE_17
13.1
B_CELL_NAIVE_18
12.9
B_CELL_NAIVE_19
12.9
B_CELL_NAIVE_20
12.8
B_CELL_NAIVE_21
12.7
B_CELL_NAIVE_22
12.5
B_CELL_NAIVE_23
12.4
B_CELL_NAIVE_24
12.2
B_CELL_NAIVE_25
12.2
B_CELL_NAIVE_26
12.0
B_CELL_NAIVE_27
11.9
B_CELL_NAIVE_28
11.9
B_CELL_NAIVE_29
11.9
B_CELL_NAIVE_30
11.7
B_CELL_NAIVE_31
11.7
B_CELL_NAIVE_32
11.5
B_CELL_NAIVE_33
11.5
B_CELL_NAIVE_34
11.4
B_CELL_NAIVE_35
11.2
B_CELL_NAIVE_36
11.2
B_CELL_NAIVE_37
11.1
B_CELL_NAIVE_38
11.0
B_CELL_NAIVE_39
11.0
B_CELL_NAIVE_40
11.0
B_CELL_NAIVE_41
10.9
B_CELL_NAIVE_42
10.8
B_CELL_NAIVE_43
10.5
B_CELL_NAIVE_44
10.4
B_CELL_NAIVE_45
10.4
B_CELL_NAIVE_46
10.3
B_CELL_NAIVE_47
10.1
B_CELL_NAIVE_48
10.0
B_CELL_NAIVE_49
10.0
B_CELL_NAIVE_50
10.0
B_CELL_NAIVE_51
9.9
B_CELL_NAIVE_52
9.7
B_CELL_NAIVE_53
9.5
B_CELL_NAIVE_54
9.5
B_CELL_NAIVE_55
9.4
B_CELL_NAIVE_56
9.3
B_CELL_NAIVE_57
9.2
B_CELL_NAIVE_58
9.1
B_CELL_NAIVE_59
8.9
B_CELL_NAIVE_60
8.9
B_CELL_NAIVE_61
8.7
B_CELL_NAIVE_62
8.6
B_CELL_NAIVE_63
8.5
B_CELL_NAIVE_64
8.3
B_CELL_NAIVE_65
8.1
B_CELL_NAIVE_66
7.7
B_CELL_NAIVE_67
7.5
B_CELL_NAIVE_68
7.5
B_CELL_NAIVE_69
7.2
B_CELL_NAIVE_70
7.2
B_CELL_NAIVE_71
7.1
B_CELL_NAIVE_72
7.1
B_CELL_NAIVE_73
6.9
B_CELL_NAIVE_74
6.8
B_CELL_NAIVE_75
5.9
B_CELL_NAIVE_76
5.9
B_CELL_NAIVE_77
5.7
B_CELL_NAIVE_78
5.7
B_CELL_NAIVE_79
5.6
B_CELL_NAIVE_80
5.5
B_CELL_NAIVE_81
4.5
B_CELL_NAIVE_82
4.5
B_CELL_NAIVE_83
4.4
B_CELL_NAIVE_84
3.8
B_CELL_NAIVE_85
3.7
B_CELL_NAIVE_86
3.5
B_CELL_NAIVE_87
3.4
B_CELL_NAIVE_88
3.2
B_CELL_NAIVE_89
2.8
B_CELL_NAIVE_90
2.3
B_CELL_NAIVE_91
1.5
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