A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
47.4
nTPM
Monaco:
64.3
nTPM
Schmiedel:
19.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.4
HPA sample
nTPM
NK-cell nTPM: 47.4
Samples: 6
Max nTPM: 101.5
Min nTPM: 1.2
P10809_1013
22.1
P10809_1033
101.5
P10809_1052
73.1
P10809_1071
32.2
P10809_1093
1.2
P10809_1103
54.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
64.3
Monaco sample
nTPM
NK-cell nTPM: 64.4
Samples: 4
Max nTPM: 95.0
Min nTPM: 38.9
RHH5316_R3683
69.4
RHH5224_R3596
95.0
RHH5253_R3625
38.9
RHH5282_R3654
54.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.3
Schmiedel sample id
TPM
NK-cell TPM: 19.3
Samples: 90
Max TPM: 40.3
Min TPM: 4.3
NK_1
40.3
NK_2
33.1
NK_3
32.9
NK_4
32.9
NK_5
32.5
NK_6
32.5
NK_7
32.1
NK_8
31.3
NK_9
30.5
NK_10
29.6
NK_11
29.3
NK_12
28.6
NK_13
28.5
NK_14
27.3
NK_15
27.0
NK_16
27.0
NK_17
26.8
NK_18
26.7
NK_19
26.2
NK_20
25.4
NK_21
24.7
NK_22
24.2
NK_23
24.1
NK_24
23.9
NK_25
23.7
NK_26
23.6
NK_27
23.5
NK_28
23.4
NK_29
23.2
NK_30
22.9
NK_31
22.4
NK_32
22.3
NK_33
22.2
NK_34
21.6
NK_35
21.5
NK_36
21.5
NK_37
21.4
NK_38
21.4
NK_39
21.4
NK_40
21.4
NK_41
20.8
NK_42
20.4
NK_43
20.3
NK_44
20.3
NK_45
20.2
NK_46
19.9
NK_47
19.5
NK_48
19.3
NK_49
18.7
NK_50
18.0
NK_51
17.8
NK_52
17.5
NK_53
17.0
NK_54
16.7
NK_55
16.4
NK_56
16.2
NK_57
16.2
NK_58
16.1
NK_59
16.1
NK_60
16.0
NK_61
15.4
NK_62
14.9
NK_63
14.9
NK_64
14.6
NK_65
14.4
NK_66
14.3
NK_67
13.9
NK_68
13.6
NK_69
13.3
NK_70
12.7
NK_71
12.5
NK_72
12.1
NK_73
12.0
NK_74
11.7
NK_75
10.8
NK_76
10.4
NK_77
10.4
NK_78
9.7
NK_79
9.6
NK_80
9.5
NK_81
9.3
NK_82
9.2
NK_83
9.2
NK_84
8.3
NK_85
7.2
NK_86
7.1
NK_87
6.7
NK_88
5.5
NK_89
5.4
NK_90
4.3
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