A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
55.0
nTPM
Monaco:
66.5
nTPM
Schmiedel:
14.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.0
HPA sample
nTPM
Classical monocyte nTPM: 55.0
Samples: 6
Max nTPM: 67.9
Min nTPM: 43.5
P10809_1003
46.1
P10809_1020
62.8
P10809_1039
67.9
P10809_1058
43.5
P10809_1080
47.9
P10809_1107
62.0
Intermediate monocyte nTPM: 52.4
Samples: 6
Max nTPM: 71.0
Min nTPM: 37.3
P10809_1004
50.4
P10809_1023
63.6
P10809_1042
71.0
P10809_1061
37.3
P10809_1081
37.3
P10809_1108
55.0
Non-classical monocyte nTPM: 48.7
Samples: 5
Max nTPM: 63.7
Min nTPM: 31.7
P10809_1005
43.2
P10809_1053
52.4
P10809_1072
63.7
P10809_1082
31.7
P10809_1109
52.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
66.5
Monaco sample
nTPM
Classical monocyte nTPM: 66.5
Samples: 4
Max nTPM: 78.8
Min nTPM: 60.0
RHH5313_R3680
78.8
RHH5221_R3593
62.2
RHH5250_R3622
64.8
RHH5279_R3651
60.0
Intermediate monocyte nTPM: 65.6
Samples: 4
Max nTPM: 96.8
Min nTPM: 44.4
RHH5314_R3681
96.8
RHH5222_R3594
44.4
RHH5251_R3623
55.8
RHH5280_R3652
65.5
Non-classical monocyte nTPM: 61.8
Samples: 4
Max nTPM: 74.1
Min nTPM: 44.8
RHH5315_R3682
74.1
RHH5223_R3595
44.8
RHH5252_R3624
61.3
RHH5281_R3653
66.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.1
Schmiedel sample id
TPM
Classical monocyte TPM: 14.1
Samples: 91
Max TPM: 25.0
Min TPM: 5.7
MONOCYTES_1
25.0
MONOCYTES_2
22.8
MONOCYTES_3
21.4
MONOCYTES_4
21.0
MONOCYTES_5
20.9
MONOCYTES_6
20.4
MONOCYTES_7
20.3
MONOCYTES_8
20.1
MONOCYTES_9
20.0
MONOCYTES_10
19.8
MONOCYTES_11
19.8
MONOCYTES_12
19.7
MONOCYTES_13
19.5
MONOCYTES_14
19.5
MONOCYTES_15
19.3
MONOCYTES_16
19.0
MONOCYTES_17
19.0
MONOCYTES_18
19.0
MONOCYTES_19
18.9
MONOCYTES_20
18.4
MONOCYTES_21
18.4
MONOCYTES_22
18.3
MONOCYTES_23
18.2
MONOCYTES_24
18.0
MONOCYTES_25
17.9
MONOCYTES_26
17.9
MONOCYTES_27
17.7
MONOCYTES_28
16.0
MONOCYTES_29
15.7
MONOCYTES_30
15.7
MONOCYTES_31
15.6
MONOCYTES_32
15.5
MONOCYTES_33
15.1
MONOCYTES_34
14.9
MONOCYTES_35
14.7
MONOCYTES_36
14.6
MONOCYTES_37
14.5
MONOCYTES_38
14.4
MONOCYTES_39
14.4
MONOCYTES_40
14.3
MONOCYTES_41
14.2
MONOCYTES_42
14.0
MONOCYTES_43
13.8
MONOCYTES_44
13.7
MONOCYTES_45
13.7
MONOCYTES_46
13.5
MONOCYTES_47
13.3
MONOCYTES_48
13.3
MONOCYTES_49
13.3
MONOCYTES_50
13.1
MONOCYTES_51
12.8
MONOCYTES_52
12.7
MONOCYTES_53
12.6
MONOCYTES_54
12.5
MONOCYTES_55
12.5
MONOCYTES_56
12.4
MONOCYTES_57
12.3
MONOCYTES_58
12.1
MONOCYTES_59
12.1
MONOCYTES_60
12.0
MONOCYTES_61
11.9
MONOCYTES_62
11.9
MONOCYTES_63
11.8
MONOCYTES_64
11.6
MONOCYTES_65
11.5
MONOCYTES_66
11.5
MONOCYTES_67
11.4
MONOCYTES_68
11.4
MONOCYTES_69
11.2
MONOCYTES_70
11.1
MONOCYTES_71
11.1
MONOCYTES_72
10.6
MONOCYTES_73
10.4
MONOCYTES_74
9.9
MONOCYTES_75
9.7
MONOCYTES_76
9.6
MONOCYTES_77
9.2
MONOCYTES_78
9.2
MONOCYTES_79
9.1
MONOCYTES_80
9.1
MONOCYTES_81
8.9
MONOCYTES_82
8.8
MONOCYTES_83
8.5
MONOCYTES_84
8.5
MONOCYTES_85
8.3
MONOCYTES_86
7.6
MONOCYTES_87
6.7
MONOCYTES_88
6.6
MONOCYTES_89
6.4
MONOCYTES_90
5.9
MONOCYTES_91
5.7
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Non-classical monocyte TPM: 13.1
Samples: 90
Max TPM: 24.1
Min TPM: 3.2
M2_1
24.1
M2_2
23.0
M2_3
22.7
M2_4
22.4
M2_5
22.2
M2_6
21.9
M2_7
21.1
M2_8
20.8
M2_9
20.1
M2_10
19.7
M2_11
19.6
M2_12
19.0
M2_13
18.6
M2_14
18.5
M2_15
18.1
M2_16
17.8
M2_17
17.6
M2_18
17.6
M2_19
17.5
M2_20
17.4
M2_21
17.0
M2_22
16.9
M2_23
16.7
M2_24
16.7
M2_25
16.6
M2_26
16.4
M2_27
16.0
M2_28
15.9
M2_29
15.7
M2_30
15.4
M2_31
15.3
M2_32
15.0
M2_33
14.7
M2_34
14.7
M2_35
14.5
M2_36
14.4
M2_37
14.4
M2_38
14.3
M2_39
14.2
M2_40
14.2
M2_41
14.1
M2_42
13.6
M2_43
13.4
M2_44
13.4
M2_45
13.2
M2_46
13.1
M2_47
13.1
M2_48
13.1
M2_49
13.0
M2_50
12.9
M2_51
12.7
M2_52
12.2
M2_53
12.2
M2_54
12.1
M2_55
12.1
M2_56
11.8
M2_57
11.4
M2_58
11.3
M2_59
11.3
M2_60
11.1
M2_61
10.9
M2_62
10.9
M2_63
9.9
M2_64
9.8
M2_65
9.8
M2_66
9.7
M2_67
9.6
M2_68
9.5
M2_69
9.4
M2_70
8.7
M2_71
8.5
M2_72
8.3
M2_73
8.2
M2_74
8.1
M2_75
8.1
M2_76
7.7
M2_77
7.2
M2_78
6.8
M2_79
6.2
M2_80
6.0
M2_81
5.9
M2_82
5.7
M2_83
5.6
M2_84
5.4
M2_85
5.2
M2_86
5.0
M2_87
4.8
M2_88
4.3
M2_89
4.0
M2_90
3.2
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