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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:115.7 nTPM
HPA Brain:135.1 nTPM
GTEx:115.7 nTPM
FANTOM5:373.2 Scaled Tags Per Million
Pig:241.3 nTPM
Mouse:128.9 nTPM
Allen mouse:2.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

135.1
Sample id Sample description nTPM
Amygdala
nTPM: 135.1
2814 Male, age 76, right hemisphere 156.5
2514 Male, age 75, right hemisphere 151.3
2695 Female, age 67, right hemisphere 144.9
1987 Female, age 91, left hemisphere 126.5
2517 Female, age 94, left hemisphere 96.5
Basal amygdala
nTPM: 94.0
1955 Male, age 76, both hemispheres 117.3
2609 Male, age 75, right hemisphere 115.2
2110 Male, age 80, left hemisphere 96.2
2243 Female, age 91, right hemisphere 91.1
2685 Female, age 94, left hemisphere 82.2
2827 Female, age 67, right hemisphere 62.0
Central amygdala
nTPM: 103.9
1905 Male, age 76, both hemispheres 124.8
2515 Male, age 75, right hemisphere 110.7
2701 Female, age 91, right hemisphere 95.6
2826 Female, age 94, left hemisphere 94.6
2239 Male, age 80, left hemisphere 93.6
Corticomedial amygdala
nTPM: 94.7
2240 Male, age 76, both hemispheres 121.6
2428 Male, age 75, right hemisphere 107.5
2242 Female, age 91, right hemisphere 94.8
2429 Female, age 94, left hemisphere 93.2
2829 Male, age 80, left hemisphere 91.9
2535 Female, age 67, right hemisphere 59.1
Lateral amygdala
nTPM: 92.2
1883 Male, age 76, both hemispheres 119.1
2516 Male, age 75, right hemisphere 106.5
2534 Female, age 94, left hemisphere 90.5
2256 Male, age 80, left hemisphere 85.2
2255 Female, age 91, right hemisphere 84.7
2830 Female, age 67, right hemisphere 67.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

115.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 115.7
Samples: 181

Max nTPM: 192.2
Min nTPM: 34.4
Std nTPM: 28.2
Median nTPM: 115.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 192.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 189.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 186.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 183.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 176.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 174.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 168.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 166.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 166.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 164.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 164.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 163.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 161.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 160.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 157.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 156.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 154.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 152.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 152.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 152.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 149.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 148.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 148.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 148.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 147.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 147.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 146.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 144.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 143.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 142.0
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 140.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 140.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 139.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 137.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 136.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 136.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 136.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 136.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 136.2
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 135.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 135.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 134.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 134.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 134.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 134.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 133.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 133.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 132.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 132.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 131.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 131.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 130.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 129.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 129.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 128.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 128.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 128.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 126.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 126.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 126.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 126.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 126.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 126.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 125.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 125.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 125.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 125.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 124.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 124.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 124.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 123.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 123.5
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 123.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 122.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 122.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 122.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 121.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 121.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 120.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 120.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 120.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 119.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 119.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 118.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 117.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 117.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 117.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 116.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 116.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 115.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 115.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 115.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 115.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 114.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 114.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 113.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 112.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 111.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 110.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 109.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 108.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 108.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 108.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 108.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 107.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 107.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 107.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 107.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 106.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 106.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 105.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 104.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 104.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 103.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 103.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 103.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 102.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 102.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 102.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 101.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 101.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 100.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 100.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 100.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 100.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 100.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 99.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 99.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 99.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 99.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 98.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 97.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 97.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 97.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 97.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 96.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 96.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 96.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 95.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 95.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 95.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 94.4
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 93.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 92.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 92.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 92.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 92.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 91.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 91.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 90.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 90.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 90.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 90.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 89.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 89.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 85.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 85.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 84.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 83.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 82.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 80.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 80.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 80.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 78.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 78.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 78.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 76.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 75.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 75.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 74.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 73.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 73.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 73.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 72.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 71.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 68.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 64.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 59.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 53.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 52.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 34.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

373.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 373.2
FF:10151-102I7 76 years, female 373.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

241.3
Pig sample Sample description nTPM
Amygdala
nTPM: 241.3
Samples: 4

Max nTPM: 282.1
Min nTPM: 203.4
Sample A Female 282.1
Sample B Female 261.5
Sample C Male 218.1
Sample D Male 203.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 129.0
Samples: 4

Max nTPM: 138.2
Min nTPM: 117.9
Sample A Male 117.9
Sample B Male 128.1
Sample C Female 138.2
Sample D Female 131.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.9
69080518 Antisense, RP_050324_02_C07, Mouse strain C57BL/6J (56 days, male) 2.9

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