HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:225.5 nTPM
HPA Brain:273.3 nTPM
GTEx:225.5 nTPM
FANTOM5:197.3 Scaled Tags Per Million
Pig:153.7 nTPM
Mouse:97.7 nTPM
Allen mouse:1.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003281Antibody CAB011204
Glial cells Not detectedNot detected
Neuronal cells Not detectedLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 273.3
Sample id Sample description nTPM
Hippocampus
nTPM: 236.7
2529 Female, age 94, left hemisphere 269.0
2621 Female, age 67, right hemisphere 254.9
1911 Female, age 85, right hemisphere 253.2
1898 Male, age 80, left hemisphere 234.1
1855 Male, age 76, left hemisphere 215.5
2148 Female, age 91, left hemisphere 193.5
Dentate gyrus
nTPM: 247.6
2530 Female, age 94, left hemisphere 397.6
2010 Male, age 76, both hemispheres 272.3
2531 Female, age 67, both hemispheres 231.0
2246 Female, age 85, both hemispheres 225.2
1927 Female, age 91, both hemispheres 189.3
2528 Male, age 74, both hemispheres 169.9
Entorhinal gyrus
nTPM: 243.3
2117 Female, age 91, right hemisphere 302.9
2686 Male, age 75, right hemisphere 297.5
1938 Female, age 85, left hemisphere 246.9
1787 Male, age 76, left hemisphere 211.8
2613 Female, age 94, left hemisphere 205.2
2764 Male, age 80, right hemisphere 195.6
Hippocampus, CA1
nTPM: 211.2
2749 Male, age 80, left hemisphere 231.8
1873 Female, age 85, both hemispheres 213.0
2082 Female, age 91, right hemisphere 206.9
2527 Male, age 74, both hemispheres 206.7
2045 Male, age 76, both hemispheres 197.6
Hippocampus, CA2
nTPM: 229.9
1963 Male, age 80, left hemisphere 311.1
2437 Female, age 94, left hemisphere 221.2
2113 Female, age 91, right hemisphere 218.8
1940 Female, age 85, left hemisphere 210.7
1892 Male, age 76, both hemispheres 209.6
2249 Male, age 74, both hemispheres 208.0
Hippocampus, CA3
nTPM: 201.2
1891 Female, age 85, both hemispheres 263.3
1867 Male, age 76, both hemispheres 240.2
2137 Male, age 80, left hemisphere 236.8
2861 Female, age 67, both hemispheres 179.3
2436 Male, age 74, both hemispheres 152.6
2620 Female, age 94, left hemisphere 135.1
Parahippocampal cortex
nTPM: 230.9
2532 Female, age 72, left hemisphere 291.1
2692 Male, age 74, both hemispheres 265.6
2018 Male, age 76, both hemispheres 254.3
2245 Female, age 91, both hemispheres 237.1
1933 Female, age 85, both hemispheres 226.9
1850 Male, age 80, both hemispheres 226.5
1990 Female, age 91, right hemisphere 224.8
2622 Female, age 67, right hemisphere 214.0
2250 Female, age 67, right hemisphere 189.2
2693 Female, age 94, both hemispheres 179.4
Perirhinal gyrus
nTPM: 193.1
2848 Male, age 76, right hemisphere 225.3
1841 Female, age 85, right hemisphere 200.0
1794 Male, age 80, right hemisphere 190.4
1847 Female, age 91, left hemisphere 177.0
2521 Female, age 94, right hemisphere 172.9
Subiculum
nTPM: 273.3
2042 Male, age 76, both hemispheres 362.8
2438 Female, age 94, left hemisphere 332.7
1901 Male, age 80, both hemispheres 287.8
1977 Female, age 85, both hemispheres 259.0
2729 Female, age 91, right hemisphere 220.1
2619 Male, age 74, both hemispheres 177.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 225.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 225.5
Samples: 255

Max nTPM: 783.7
Min nTPM: 70.7
Std nTPM: 120.9
Median nTPM: 192.9
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 783.7
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 739.2
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 667.8
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 666.9
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 649.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 635.4
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 626.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 611.7
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 605.0
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 598.8
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 471.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 197.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 197.3
FF:10153-102I9 76 years, female 215.1
FF:10169-103B7 60 years, female 179.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 153.7
Pig sample Sample description nTPM
Subiculum
nTPM: 127.8
Samples: 4

Max nTPM: 151.3
Min nTPM: 117.6
Sample A Female 151.3
Sample B Female 122.1
Sample C Male 117.6
Sample D Male 120.1
Dorsal hippocampus
nTPM: 153.7
Samples: 4

Max nTPM: 192.8
Min nTPM: 108.9
Sample A Female 192.8
Sample B Female 144.7
Sample C Male 168.3
Sample D Male 108.9
Entorhinal cortex
nTPM: 128.8
Samples: 4

Max nTPM: 134.8
Min nTPM: 119.0
Sample A Female 131.1
Sample B Female 134.8
Sample C Male 130.4
Sample D Male 119.0
Ventral hippocampus
nTPM: 132.9
Samples: 4

Max nTPM: 173.1
Min nTPM: 109.6
Sample A Female 173.1
Sample B Female 109.6
Sample C Male 128.0
Sample D Male 121.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 97.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 85.0
Samples: 4

Max nTPM: 86.6
Min nTPM: 82.6
Sample A Male 86.5
Sample B Male 82.6
Sample C Female 86.6
Sample D Female 84.4
Hippocampal formation
nTPM: 97.7
Samples: 4

Max nTPM: 105.1
Min nTPM: 88.2
Sample A Male 100.3
Sample B Male 97.0
Sample C Female 105.1
Sample D Female 88.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.2
71280538 Antisense, RP_050818_01_A11, Mouse strain C57BL/6J (56 days, male) 2.4
77799059 Antisense, RP_070212_03_E04, Mouse strain C57BL/6J (56 days, male) 1.1
70813353 Antisense, RP_050712_03_G08, Mouse strain C57BL/6J (56 days, male) 0.2

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