MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:288.3 nTPM
HPA Brain:434.9 nTPM
GTEx:288.3 nTPM
FANTOM5:365.8 Scaled Tags Per Million
Pig:204.3 nTPM
Mouse:94.6 nTPM
Allen mouse:0.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 434.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 368.1
1833 Male, age 53, unknown 444.9
2666 Male, age 74, left hemisphere 443.4
1830 Male, age 51, unknown 434.3
2411 Female, age 72, unknown 413.9
1870 Female, age 42, unknown 376.1
2019 Male, age 18, unknown 366.0
2586 Male, age 75, left hemisphere 338.8
2828 Female, age 72, unknown 299.1
2219 Male, age 76, both hemispheres 287.4
1827 Male, age 72, unknown 276.8
Dorsal raphe nucleus
nTPM: 273.3
2750 Male, age 76, both hemispheres 356.9
2016 Female, age 72, unknown 317.1
1828 Male, age 53, unknown 281.9
2298 Female, age 72, unknown 207.0
2047 Male, age 72, unknown 203.4
Inferior colliculus
nTPM: 280.3
2849 Male, age 72, unknown 304.4
1848 Female, age 42, unknown 277.9
1890 Male, age 53, unknown 271.1
2097 Female, age 72, unknown 267.8
Median raphe nucleus
nTPM: 241.8
2220 Male, age 76, midline 241.8
Periaquaductal grey, anterior
nTPM: 275.0
2502 Female, age 75, unknown 350.9
1947 Male, age 18, unknown 278.3
1795 Male, age 51, unknown 195.9
Periaquaductal grey, dorsal
nTPM: 254.4
2464 Female, age 72, unknown 332.9
1831 Male, age 72, unknown 251.1
1840 Male, age 53, unknown 221.1
2850 Male, age 76, both hemispheres 212.4
Periaquaductal grey, lateral
nTPM: 223.4
2053 Male, age 18, unknown 269.7
2272 Male, age 74, both hemispheres 206.4
2140 Male, age 76, both hemispheres 194.1
Pretectal area
nTPM: 255.8
1815 Male, age 53, unknown 347.9
2316 Male, age 76, right hemisphere 314.9
1817 Female, age 42, unknown 292.0
2007 Male, age 72, unknown 285.1
2825 Male, age 18, unknown 270.7
2407 Male, age 75, both hemispheres 250.3
2224 Female, age 72, unknown 248.4
1944 Female, age 72, unknown 218.6
1816 Male, age 51, unknown 215.2
2667 Female, age 75, unknown 193.5
2273 Male, age 74, both hemispheres 177.3
Red nucleus
nTPM: 434.9
2503 Female, age 72, unknown 529.7
1904 Male, age 53, unknown 475.7
1821 Female, age 72, unknown 467.6
1865 Male, age 51, unknown 461.2
2588 Male, age 74, left hemisphere 460.7
1954 Female, age 42, unknown 428.1
2227 Male, age 72, unknown 417.4
2769 Male, age 72, unknown 410.1
2823 Male, age 76, right hemisphere 401.8
2785 Male, age 18, unknown 394.6
2725 Female, age 75, unknown 389.9
2584 Male, age 75, left hemisphere 381.6
Substantia nigra
nTPM: 329.9
2409 Female, age 72, unknown 442.6
2241 Male, age 72, unknown 377.9
1851 Male, age 51, unknown 356.2
2665 Male, age 74, both hemispheres 338.4
2699 Male, age 18, unknown 336.5
2590 Female, age 75, unknown 324.6
2583 Male, age 75, right hemisphere 300.5
1889 Female, age 72, unknown 282.6
1916 Female, age 42, unknown 277.2
1941 Male, age 53, unknown 262.6
Superior colliculus
nTPM: 315.2
1913 Female, age 42, unknown 405.9
1995 Male, age 72, unknown 402.9
2587 Male, age 74, left hemisphere 382.4
1839 Male, age 51, unknown 357.2
2668 Female, age 75, unknown 339.6
1895 Male, age 76, right hemisphere 294.5
2664 Male, age 75, both hemispheres 255.3
1796 Male, age 53, unknown 244.8
2261 Male, age 18, unknown 237.0
2087 Female, age 72, unknown 232.1
Ventral tegmental area
nTPM: 315.8
2410 Female, age 72, unknown 370.9
2223 Female, age 72, unknown 354.6
1942 Male, age 51, unknown 308.9
1915 Female, age 42, unknown 305.1
2021 Male, age 53, unknown 289.8
2218 Male, age 76, both hemispheres 265.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 288.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 288.3
Samples: 183

Max nTPM: 862.9
Min nTPM: 64.9
Std nTPM: 142.1
Median nTPM: 267.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 862.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 806.7
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 732.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 730.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 724.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 666.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 576.8
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 575.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 557.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 543.0
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 538.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 365.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 365.8
FF:10158-103A5 76 years, female 365.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 204.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 192.8
Samples: 4

Max nTPM: 240.2
Min nTPM: 170.2
Sample A Female 240.2
Sample B Female 170.2
Sample C Male 188.5
Sample D Male 172.3
Midbrain
nTPM: 204.3
Samples: 4

Max nTPM: 292.9
Min nTPM: 157.9
Sample A Female 292.9
Sample B Female 204.7
Sample C Male 161.8
Sample D Male 157.9
Periaqueductal gray
nTPM: 170.8
Samples: 3

Max nTPM: 175.5
Min nTPM: 161.7
Sample B Female 175.3
Sample C Male 175.5
Sample D Male 161.7
Superior colliculi
nTPM: 182.3
Samples: 4

Max nTPM: 244.2
Min nTPM: 130.1
Sample A Female 244.2
Sample B Female 130.1
Sample C Male 179.6
Sample D Male 175.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 94.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 94.6
Samples: 4

Max nTPM: 98.1
Min nTPM: 90.7
Sample A Male 92.2
Sample B Male 97.4
Sample C Female 98.1
Sample D Female 90.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
71280538 Antisense, RP_050818_01_A11, Mouse strain C57BL/6J (56 days, male) 0.8
77799059 Antisense, RP_070212_03_E04, Mouse strain C57BL/6J (56 days, male) 0.6
70813353 Antisense, RP_050712_03_G08, Mouse strain C57BL/6J (56 days, male) 0.1

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