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COPB2
HPA
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Annotation
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Category
Tau score
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Tau score
Brain region
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Tau score
Brain region
Category
Tau score
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Reliability
Tissue
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Tau score
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Tau score
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Tau score
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Tau score
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Tau score
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Cancer
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Interacting gene (ensg_id)
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ipTM
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Category
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • COPB2
INTERACTION INTERACTION METABOLIC PATHWAYS Show tissue menu
TRANSPORT REACTIONS
Protein interactions
Protein interactions
Methods
Human metabolism
Metabolic proteins
Methods
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

COPB2
Synonyms beta'-COP, betaprime-COP
Gene descriptioni

Full gene name according to HGNC.

COPI coat complex subunit beta 2
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Read more
Disease related genes
Essential proteins
Human disease related genes
Metabolic proteins
Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.
  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)

HUMAN PROTEIN ATLAS INFORMATIONi

Summary of RNA expression analysis and annotation data generated within the Human Protein Atlas project.

Single cell type
expression clusteri

The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Non-specific - Secretory pathway (mainly)
Single cell type specificityi

The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected.

Low cell type specificity
Tissue expression
cluster (RNA)i

The RNA data was used to cluster genes according to their expression across tissues. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Non-specific - Protein processing (mainly)
Tissue specificity (RNA)i

The RNA specificity category is based on mRNA expression levels in the consensus dataset which is calculated from the RNA expression levels in samples from HPA and GTEX. The categories include: tissue enriched, group enriched, tissue enhanced, low tissue specificity and not detected.

Low tissue specificity
Subcellular locationi

Main subcellular location based on data generated in the subcellular section of the Human Protein Atlas.

Localized to the Endoplasmic reticulum In addition localized to the Golgi apparatus
Secretome annotationi

All genes with at least one predicted secreted isoform have been annotated and classified with the aim to determine if the corresponding protein(s) are:

  • secreted into blood
  • locally secreted
  • or actually being attached to membrane or retained in intracellular locations like mitochondria, endoplasmatic reticulum (ER), Golgi apparatus or lysosomes.
Not available
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 3
Cytoband q23
Chromosome location (bp) 139353946 - 139389736
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

10
Ensembl ENSG00000184432 (version 109)
Entrez gene 9276
HGNC HGNC:2232
UniProt P35606
GeneCards COPB2
ASSAYSi

Links to data of the different assays available in the Structure & Interaction resource of the Human Protein Atlas. Click on the miniature images to directly get to the respective section.

Interaction Metabolic
INTERACTIONi

In the Interaction part of this page network plots showing the gene's first-level interaction partners according to four different datasets are displayed, including a consensus network plot showing only interactions present in at least two of the datasets. By clicking on nodes the network can be expanded. In the network plots the nodes represent genes and edge color represent the number of datasets the interaction belongs to. In-house generated AlphaFold 3 predicted 3D structures for interactions in the consensus network are displayed by clicking on the blue symbols on the edges.

The highlight bar in the top of the plot can be used to color the nodes according to subcellular location (based on data in the Subcellular section), predicted location (based on signalpeptide and transmembrane region predictions), tissue specificity (based on RNA tissue expression profiles) or proteinclass. For genes categorised as single cell type or group specific the option to highlight interaction partners expressed in the same cell type will also be available in the highlight bar.

Custom highlighting of nodes is possible using the top left Filter option in which a query of choice can be built to for example label all nodes that are tissue enriched in both human and mouse brain or those that belongs to a certain tissue expression cluster. The expression cluster for the gene is stated in the box Human Protein Atlas Information above the network plot. Click on Filter in the top left in the plot to find the query builder and some example queries.

Interactions included are direct interaction and physical associations with high and medium confidence from IntAct, physical multivalidated interactions from BioGRID, interactions with>75% probability from BioPlex and significant physical interactions from OpenCell.

Filter menu »
Fields »
e.g. Brain enriched, Localized to mitochondria, Non-specific - Protein processing

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


Consensus
IntAct
BioGrid
OpenCell
BioPlex
Highlight:
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Subcell location
Predicted location
Cell type specificity
Protein class

Non-commercial use only, subject to AlphaFold3 Output Terms of Use

Interaction:
Color scheme:
Confidence
Antibodies
Interactor
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PAE plot
Number of interactions: 13
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
ARCN18221104
COPA14240780
COPB1121133124
COPE193289213
COPG1164271911
COPG210018247
COPZ111015377
MATR380116140
NFKB122256980
NUDCD1832270
SCYL18216140
SCYL354770
YAP13132304100
Show allShow less
Highlight:
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Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 1 View all protein interaction data in IntAct
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
NFKB122256980
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 29
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
ARCN18221104
BAP19711706
CANX130824238124
COPA14240780
COPB1121133124
COPE193289213
COPG1164271911
COPG210018247
COPZ111015377
CUL3404577120
HUWE15520920
KCNA3229800
MATR380116140
MATR341411600
NFKB122256980
NTRK15613400
NUDCD1832270
PPM1G17437437
PRKCE3101700
PRKN1111140500
RGS411801
RUFY1253200
SCYL18216140
SCYL354770
SEC623135318
STAU13213371390
TGOLN20310200
TPTE003000
YAP13132304100
Show allShow less
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 122
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
ADAR8239190
AGO3771144
ALDH3B10162160
ALDH7A111340
APMAP11560
ARCN18221104
ARF43322112
ARF52211108
ARF6678740
ATL1117460
ATL2326140
ATL34142614
ATP6AP181131116
ATP6AP21611331972
BCAP31231369304
BIRC60521118
CCDC11524445
CCDC4715750550
CIBAR112110
CISD24585153
CLMN10442
COPA14240780
COPB1121133124
COPE193289213
COPG1164271911
COPG210018247
COPZ111015377
CPVL20161110
CYB5A436130
CYP51A1102110
DHCR24318832
DHRS300013
DHRS712170
EI24081517
ENDOD1134322
ERLIN19121898
ERP44146134
ESYT115563310
ESYT24236120
GDPD100030
GRAMD1A21490
HNRNPA12212208280
HNRNPA2B11717109260
HNRNPA310266350
HNRNPC4334114500
HNRNPDL11641290
HNRNPM121685180
HSD17B115551045
HSD17B12152184
IFNAR1241320
ILF38461761551
ILVBL01940
ITGA623830
KDSR135319
LBR77262122
LCLAT113240
LNPK011670
LRCH3231490
LTA4H01120
MATR380116140
MCM833550
MICAL218151
MLST8231110
MRPL2410123331
MYEF200310
NBAS206110
NDC120880
NONO81165131
NSDHL337204
NSF137263917
NUDCD1832270
PPIP5K200150
PRAF2326551
PRDX21627412
PRDX4361930
PSD310330
PTBP1675330
PTBP300730
RAB181361215
RAB3GAP130571
RAB3GAP230570
RALY8651160
RCN10191390
RDH11233627
REEP41293121315
REEP5166261147
RER11234226
RTN211140
RTN38816190
RTN4231345660
SACM1L926152023
SCFD1191274715
SCYL18216140
SCYL354770
SELENOI00060
SEPTIN119617110
SEPTIN210918140
SEPTIN3714860
SEPTIN59151273
SEPTIN68171360
SEPTIN78918110
SEPTIN88310130
SERPINH10272340
SLMAP8423140
SMIM1102030
STAM212321891
SUGP200750
SUN271310341
SURF415840
TBCC02011
TEX2641237215
TMED53241026
TMED94581313
TMEM33111390
TMX23131340
UGT8202218
VAPA74401141400
VAPB453380790
YAP13132304100
ZDHHC300030
ZNF3266720257
ZW1073121315
Show allShow less
Highlight:
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Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 4
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
COPE193289213
COPG1164271911
COPZ111015377
COPZ210108
METABOLIC SUMMARYi

In this summary the pathway/subsystems to which the gene belongs is shown together with the associated cellular compartment for the reactions based on metabolite information. The number of proteins and metabolites in the pathway is shown as well as the number of reactions for the selected gene. By clicking on a pathway in the summary table the associated metabolic network map is shown, together with a gene-tissue heatmap that shows the expression of genes in that pathway in different tissues.

Gene COPB2 is associated with 4 reactions in 1 different subsystems, and present in the compartments: Cytosol, Extracellular, Golgi apparatus, Lysosome. Provided by metabolicatlas.org
Pathway / Subsystem Subsystem-associated compartments # proteins # metabolites # reactions for
this protein
Transport reactions Cytosol, Extracellular, Lysosome, Peroxisome, Mitochondria, Golgi apparatus, Endoplasmic reticulum, Nucleus, Inner mitochondria 563 1599 4
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.

Splice variant SwissProt TrEMBL Protein class Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
COPB2-201 P35606
Metabolic proteins
Predicted intracellular proteins
Plasma proteins
Disease related genes
Human disease related genes
Mapped to neXtProt
Essential proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
906 aa
102.5 kDa
No 0
COPB2-203 H0YAC7
Metabolic proteins
Predicted intracellular proteins
Human disease related genes
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
904 aa
102.2 kDa
No 0
COPB2-205 P35606
Metabolic proteins
Predicted intracellular proteins
Plasma proteins
Disease related genes
Human disease related genes
Mapped to neXtProt
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
877 aa
99 kDa
No 0
COPB2-206 A0A7I2V258
Metabolic proteins
Predicted intracellular proteins
Human disease related genes
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
828 aa
93.6 kDa
No 0
COPB2-208 D6RBT6
Metabolic proteins
Predicted intracellular proteins
Human disease related genes
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
111 aa
12.9 kDa
No 0
COPB2-209 P35606
D6RCL6
Metabolic proteins
Predicted intracellular proteins
Plasma proteins
Disease related genes
Human disease related genes
Mapped to neXtProt
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
877 aa
99 kDa
No 0
COPB2-210 H0Y938
Metabolic proteins
Predicted intracellular proteins
Human disease related genes
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
898 aa
101.5 kDa
No 0
COPB2-211 D6RBG7
Metabolic proteins
Predicted intracellular proteins
Human disease related genes
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
89 aa
10.2 kDa
No 0
COPB2-212 P35606
D6RBZ7
Metabolic proteins
Predicted intracellular proteins
Plasma proteins
Disease related genes
Human disease related genes
Mapped to neXtProt
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
877 aa
99 kDa
No 0
COPB2-213 D6R997
Metabolic proteins
Predicted intracellular proteins
Human disease related genes
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
152 aa
17.5 kDa
No 0
Show allShow less

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